Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021790X
         (575 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...   118   5e-29
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.20 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.20 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.20 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.46 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.46 
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    24   0.81 
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    22   4.3  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   4.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   7.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.5  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   9.9  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score =  118 bits (283), Expect = 5e-29
 Identities = 51/59 (86%), Positives = 55/59 (93%)
 Frame = +3

Query: 75  LLDGFIRKFVLCPECDNPETELIVSTKRNTISQGCKACGYHGQLDFNHKLNTFILKNPP 251
           LLDGFIRKFVLCPEC+NPETEL+VSTKR+TISQGCKACGYH  L+ NHKL TFILKNPP
Sbjct: 2   LLDGFIRKFVLCPECENPETELLVSTKRSTISQGCKACGYHSPLESNHKLVTFILKNPP 60



 Score = 44.4 bits (100), Expect = 7e-07
 Identities = 22/50 (44%), Positives = 28/50 (56%)
 Frame = +2

Query: 230 FYTQEPACHDPAVQGSSLTEGNRGKRSKRSGPGSNNTATNGSHEGQETEA 379
           F  + P   +PAVQGSSLTEG R KRSKR    +N   +    + +  EA
Sbjct: 54  FILKNPPNLNPAVQGSSLTEGKRSKRSKRPNGDTNGDTSQVDDQNESLEA 103



 Score = 38.7 bits (86), Expect = 4e-05
 Identities = 17/22 (77%), Positives = 21/22 (95%)
 Frame = +1

Query: 508 EAVRARMQDLTEGAKIITLSED 573
           EAVRARMQDLTEGAK +T+++D
Sbjct: 127 EAVRARMQDLTEGAKNMTINDD 148


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 263 PDHGRRVLEYKSIQLVIEVKLSMVTAGLASLGDGVPLRG 147
           PD G ++    +I L + V L++V   L  + D +PL G
Sbjct: 237 PDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIPLLG 275


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 263 PDHGRRVLEYKSIQLVIEVKLSMVTAGLASLGDGVPLRG 147
           PD G ++    +I L + V L++V   L  + D +PL G
Sbjct: 237 PDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIPLLG 275


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 263 PDHGRRVLEYKSIQLVIEVKLSMVTAGLASLGDGVPLRG 147
           PD G ++    +I L + V L++V   L  + D +PL G
Sbjct: 237 PDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIPLLG 275


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 263 PDHGRRVLEYKSIQLVIEVKLSMVTAGLASLGDGVPLRG 147
           PD G ++    +I L + V L++V   + +  D VPL G
Sbjct: 237 PDSGEKLTLGVTILLSLTVFLNLVAEKIPTTSDAVPLIG 275


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 263 PDHGRRVLEYKSIQLVIEVKLSMVTAGLASLGDGVPLRG 147
           PD G ++    +I L + V L++V   + +  D VPL G
Sbjct: 237 PDSGEKLTLGVTILLSLTVFLNLVAEKIPTTSDAVPLIG 275


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 114 ECDNPETELIVSTKRNTISQGCKACGYHGQL 206
           EC++P   L+V+    T++  C+A   H QL
Sbjct: 194 ECNDPLVALVVNENNTTVNNICQAT--HKQL 222


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 339 VLLDPGPERFERFPRLPSVSEEP 271
           V+   GP +F+   RLP   ++P
Sbjct: 202 VIKTSGPHKFQPLLRLPKFKKKP 224


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 302 KRSKRSGPGSNNTATNGSHEG 364
           K ++ SG G+NN  T G H G
Sbjct: 181 KAAQVSG-GNNNNGTPGGHSG 200


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 11/38 (28%), Positives = 14/38 (36%)
 Frame = +2

Query: 242 EPACHDPAVQGSSLTEGNRGKRSKRSGPGSNNTATNGS 355
           EP  H P   GS+      G     +  G   T  +GS
Sbjct: 31  EPQLHSPCATGSNGLPAGAGSNLLCASNGLVTTLASGS 68


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 209  VKLSMVTAGLASLGDGVPLRG 147
            V L     G +S  +GVPL+G
Sbjct: 1088 VALKSAQQGSSSSSEGVPLKG 1108


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +2

Query: 140 DCLHEAEHHLP 172
           DC+HE   H+P
Sbjct: 357 DCIHELLGHMP 367


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,404
Number of Sequences: 336
Number of extensions: 2174
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)