Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021790X
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar...   112   3e-26
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    38   0.001
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    27   2.0  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    26   3.4  
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    25   6.0  
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    25   6.0  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    25   7.9  

>SPAC2F7.05c |||translation initiation factor eIF5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score =  112 bits (270), Expect = 3e-26
 Identities = 51/84 (60%), Positives = 60/84 (71%)
 Frame = +3

Query: 3   QTQFDFKNERFIVNGSHDSSKLQDLLDGFIRKFVLCPECDNPETELIVSTKRNTISQGCK 182
           QT      +R+IVNG+HD+ KLQDLLD FIR+FVLC  C NPETEL ++ K  TIS  CK
Sbjct: 65  QTTIIADMDRYIVNGAHDAGKLQDLLDVFIRRFVLCASCQNPETELSINKKDQTISYDCK 124

Query: 183 ACGYHGQLDFNHKLNTFILKNPPA 254
           ACGY G +D  HKL   I+KNPPA
Sbjct: 125 ACGYRGVIDGRHKLTGVIVKNPPA 148


>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 24  NERFIVNGSHDSSKLQDLLDGFIRKFVLCPECDNPETELIVSTKRNTI-SQGCKACG 191
           + R I+ G     +++++L  +I ++V C  C +P+T   + TK N I    C+ACG
Sbjct: 245 SSRLIIKGRFQQKQIENVLRRYIVEYVTCKTCKSPDT---ILTKENRIFFMTCEACG 298


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 387 SFLASVSCPSWLPLVAVLLDPGPERFERFPRLPSVSEE 274
           + LAS     W+ L    L P PERF   P+  S S E
Sbjct: 576 TLLASNKVTDWVKLSEFFLGPTPERFTFTPKHKSNSVE 613


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 192 NRRPCILGRWCSASWRQSARSRGC 121
           N +P     WC + WR+   + GC
Sbjct: 167 NEQPAFCVNWCPSRWREQYIAVGC 190


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 308 SVFHDCPQSVKSLAQPDHGRRVLEYKSIQLVIE 210
           S   D P+ +  L+Q + GR+V E   I+  +E
Sbjct: 166 SASRDSPEKLLQLSQENQGRKVQEINEIRKAME 198


>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 174 GCKACGYHGQLDFNHKLNTF 233
           G    GYHG  D++H ++ F
Sbjct: 217 GSTTAGYHGWFDYSHVISRF 236


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +1

Query: 109 ALSATTPRP--S*LSPRSGTPSPK--DARPAVTMDSLTS 213
           A++ T+P+     L P +GTPSPK   AR A   + + S
Sbjct: 314 AVTDTSPKTLFDPLKPNTGTPSPKFISARAAAAAEGVVS 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,721
Number of Sequences: 5004
Number of extensions: 36281
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)