Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021790X
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0462 + 9583558-9584910 91 4e-19
06_03_0051 - 16023915-16023944,16024025-16024680,16024808-16025300 30 1.5
06_01_0111 + 870781-871017,871194-871240,871681-871947,872196-87... 29 2.0
01_06_1563 + 38271816-38272145 29 2.0
03_02_0903 + 12285874-12285918,12286715-12286820,12286906-122869... 29 2.7
02_05_0965 + 33136373-33136512,33136595-33136688,33136845-331368... 29 2.7
03_01_0152 - 1211859-1211903,1212247-1212443,1213469-1213532,121... 28 4.6
07_01_0380 - 2834080-2834451,2835945-2836130 28 6.1
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 28 6.1
>09_02_0462 + 9583558-9584910
Length = 450
Score = 91.5 bits (217), Expect = 4e-19
Identities = 42/83 (50%), Positives = 57/83 (68%)
Frame = +3
Query: 3 QTQFDFKNERFIVNGSHDSSKLQDLLDGFIRKFVLCPECDNPETELIVSTKRNTISQGCK 182
Q++FD K +VNG+HD++KL LL+ FI+K+V C C NPETE+++S K I+ C
Sbjct: 66 QSKFDEKTGISLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEVLIS-KTQMITLKCA 124
Query: 183 ACGYHGQLDFNHKLNTFILKNPP 251
ACG+ +D KL TFILKNPP
Sbjct: 125 ACGFVSDVDMRDKLTTFILKNPP 147
>06_03_0051 - 16023915-16023944,16024025-16024680,16024808-16025300
Length = 392
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 296 RGKRSKRSGPGSNNTATNGSHEGQETE 376
RGKR + G +NN + GS++G++ E
Sbjct: 253 RGKREDKDGEKTNNNKSKGSYQGRKME 279
>06_01_0111 +
870781-871017,871194-871240,871681-871947,872196-872848,
872997-873043,873124-873169,873371-873416,873592-873720,
873822-873942
Length = 530
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 94 VNSCCALSATTPRPS*LSPRSGTPSPKDARPAVTMDSLTSITS 222
VNS + + P+ +SP S + SP D V D++TS+ S
Sbjct: 218 VNSAPMSNTPSQTPTFVSPSSSSTSPLDNPHIVAQDTITSVVS 260
>01_06_1563 + 38271816-38272145
Length = 109
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2
Query: 245 PACHDPAVQGSSLTEGNRGKRSKRSGPGSNNTATNGSHEGQETEAKN 385
P C S+ E G + + S+ + TN H+GQE KN
Sbjct: 60 PKCRVKLKDSYSIQENYMGSKPREMAISSSASTTNPRHKGQEIPQKN 106
>03_02_0903 +
12285874-12285918,12286715-12286820,12286906-12286961,
12287062-12287113,12287182-12287282,12287891-12288287,
12288852-12288937,12289061-12289078
Length = 286
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +3
Query: 27 ERFIVNGSHDSSKLQDLLDGFIRKFVLCPECDNPETEL 140
+R ++ G + +L +I ++V+C C +P+T L
Sbjct: 231 QRLVIKGRFAPKNFEAILRRYINEYVICNGCKSPDTIL 268
>02_05_0965 +
33136373-33136512,33136595-33136688,33136845-33136889,
33137007-33137174,33137247-33137331,33137531-33137637,
33137918-33137998,33138232-33138284,33138361-33138460,
33138911-33139054,33139268-33139364,33139528-33139611,
33139904-33140123,33140204-33140297,33140406-33140975,
33141348-33141449,33141564-33141656,33141834-33141836
Length = 759
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 75 LLDGFIRKFVLCPECDNPETELIVSTK-RNTISQGCKACGYHGQ 203
++DG +FVL P E++ S ++ GCKA GYH +
Sbjct: 94 VIDGLPAEFVLGRVGKPPSKEMVESMPYTQSLLAGCKATGYHAK 137
>03_01_0152 -
1211859-1211903,1212247-1212443,1213469-1213532,
1213630-1213802,1213889-1214075
Length = 221
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +3
Query: 210 FNHKLNTFILKNPPAMIRLCKA 275
F+ K TFILK PPA + L KA
Sbjct: 119 FDDKSFTFILKTPPASVLLLKA 140
>07_01_0380 - 2834080-2834451,2835945-2836130
Length = 185
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 115 SATTPRPS*LSPRSGTPSPKDARPAVTMDSLTS 213
SAT PRP+ +SPR+G + A P + S
Sbjct: 126 SATPPRPALVSPRAGLQAAAAAAPTMNQPPAAS 158
>02_05_0220 -
26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 51 HDSSKLQDLLDGFIRKFVLCPECDNPETELIVSTKR 158
HD++ LQ LLDG R + + E D+ +T T+R
Sbjct: 742 HDANALQMLLDGCRRCYWVIHEADSIDTFTFTGTER 777
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,246,858
Number of Sequences: 37544
Number of extensions: 276692
Number of successful extensions: 1050
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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