Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021790X
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51640| Best HMM Match : No HMM Matches (HMM E-Value=.)             120   1e-27
SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 29   2.1  
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_59747| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_50586| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_51640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 880

 Score =  120 bits (288), Expect = 1e-27
 Identities = 48/83 (57%), Positives = 64/83 (77%)
 Frame = +3

Query: 3   QTQFDFKNERFIVNGSHDSSKLQDLLDGFIRKFVLCPECDNPETELIVSTKRNTISQGCK 182
           QTQ D KNER+IVNG+H + KLQ++LDGFI +FVLC  C+NPET L+V T++  I Q CK
Sbjct: 65  QTQIDLKNERYIVNGAHQADKLQEILDGFIERFVLCSSCENPETVLVVDTRKERIGQNCK 124

Query: 183 ACGYHGQLDFNHKLNTFILKNPP 251
           ACG+ G ++  H+L T+I +NPP
Sbjct: 125 ACGHQGFINLQHRLITYICRNPP 147


>SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1182

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +3

Query: 123 NPETELIVSTKRNTISQGCKAC--GYHG 200
           NP+T + V  + NT+ + C+AC  G++G
Sbjct: 340 NPKTGVCVDCQHNTVGKNCEACAVGFYG 367


>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 257 DPAVQGSSLTEGNRGKRSKRSGPGSNNTATNGSH 358
           D  +Q   L +G+ G      GPG+ + +  GSH
Sbjct: 622 DIIIQSGGLIDGSSGGYPAARGPGAGSQSVGGSH 655


>SB_59747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1064

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 228  YSTCD*SQAVHGNRRPCILGRWCSAS 151
            YSTCD   A   +R P I GR+C  S
Sbjct: 944  YSTCDWGFAAPSSRLPDIKGRFCPDS 969


>SB_50586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 511 AVRARMQDLTEGAKIITLSED 573
           AV+ RM+DLT G K +T ++D
Sbjct: 24  AVQRRMEDLTSGVKGLTFTDD 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,917,967
Number of Sequences: 59808
Number of extensions: 302200
Number of successful extensions: 981
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)