Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021790X
(575 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.23
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.23
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.23
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.23
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 26 0.23
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.31
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.31
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.31
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.31
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 24 1.2
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 23 1.6
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 23 2.9
AF388659-2|AAK71994.1| 463|Apis mellifera 1D-myo-inositol-trisp... 21 8.7
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 21 8.7
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.23
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 263 PDHGRRVLEYKSIQLVIEVKLSMVTAGLASLGDGVPLRG 147
PD G ++ +I L + V L++V L + D +PL G
Sbjct: 220 PDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIPLLG 258
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.23
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 263 PDHGRRVLEYKSIQLVIEVKLSMVTAGLASLGDGVPLRG 147
PD G ++ +I L + V L++V L + D +PL G
Sbjct: 220 PDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIPLLG 258
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.23
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 263 PDHGRRVLEYKSIQLVIEVKLSMVTAGLASLGDGVPLRG 147
PD G ++ +I L + V L++V L + D +PL G
Sbjct: 220 PDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIPLLG 258
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 26.2 bits (55), Expect = 0.23
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 263 PDHGRRVLEYKSIQLVIEVKLSMVTAGLASLGDGVPLRG 147
PD G ++ +I L + V L++V L + D +PL G
Sbjct: 288 PDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIPLLG 326
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 26.2 bits (55), Expect = 0.23
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 263 PDHGRRVLEYKSIQLVIEVKLSMVTAGLASLGDGVPLRG 147
PD G ++ +I L + V L+MV + + D VPL G
Sbjct: 257 PDSGEKLSLGVTILLSLTVFLNMVAETMPATSDAVPLLG 295
Score = 21.4 bits (43), Expect = 6.6
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +3
Query: 36 IVNG-SHDSSKLQDLLDGF 89
+VNG SH+ L DLLD +
Sbjct: 17 LVNGGSHEKRLLNDLLDTY 35
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.31
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 263 PDHGRRVLEYKSIQLVIEVKLSMVTAGLASLGDGVPLRG 147
PD G ++ +I L + V L++V + + D VPL G
Sbjct: 220 PDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIG 258
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.31
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 263 PDHGRRVLEYKSIQLVIEVKLSMVTAGLASLGDGVPLRG 147
PD G ++ +I L + V L++V + + D VPL G
Sbjct: 220 PDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIG 258
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.31
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 263 PDHGRRVLEYKSIQLVIEVKLSMVTAGLASLGDGVPLRG 147
PD G ++ +I L + V L++V + + D VPL G
Sbjct: 220 PDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIG 258
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.8 bits (54), Expect = 0.31
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 263 PDHGRRVLEYKSIQLVIEVKLSMVTAGLASLGDGVPLRG 147
PD G ++ +I L + V L++V + + D VPL G
Sbjct: 288 PDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIG 326
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein
RJP57-1 protein.
Length = 544
Score = 23.8 bits (49), Expect = 1.2
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = +2
Query: 269 QGSSLTEGNRGKRSKRSGPGSNNTATNGSHEGQETEAKNE 388
Q + GNR +K++G N+ NG+ + + N+
Sbjct: 465 QNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNK 504
Score = 23.8 bits (49), Expect = 1.2
Identities = 9/40 (22%), Positives = 19/40 (47%)
Frame = +2
Query: 269 QGSSLTEGNRGKRSKRSGPGSNNTATNGSHEGQETEAKNE 388
Q + GN+ +K++G N+ NG+ + +N+
Sbjct: 490 QNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQND 529
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.4 bits (48), Expect = 1.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 125 PRDRADCLHEAEHHLPRMQGLRLPWTA*LQS 217
P DR C E E M+ +R W A LQS
Sbjct: 146 PMDRQLCHIEIESFGYTMRDIRYKWNAGLQS 176
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.6 bits (46), Expect = 2.9
Identities = 14/61 (22%), Positives = 27/61 (44%)
Frame = +3
Query: 72 DLLDGFIRKFVLCPECDNPETELIVSTKRNTISQGCKACGYHGQLDFNHKLNTFILKNPP 251
D D F P+ +PET + VS +R+++ C G + + + T + + P
Sbjct: 353 DYQDAFCNIVSCSPQTVHPETIIDVSRRRSSLI--CDVYGVNESVSYERGSMTVSVTSKP 410
Query: 252 A 254
+
Sbjct: 411 S 411
>AF388659-2|AAK71994.1| 463|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
Length = 463
Score = 21.0 bits (42), Expect = 8.7
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -3
Query: 189 RRPCILGRWCSASWRQ 142
R P ++GR S+ WR+
Sbjct: 121 RNPSVVGRKKSSGWRK 136
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 21.0 bits (42), Expect = 8.7
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +3
Query: 165 ISQGCKACGYHGQLDFNHK 221
I + + CG H D+N K
Sbjct: 139 IQKNLQCCGVHSLSDYNDK 157
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,051
Number of Sequences: 438
Number of extensions: 2811
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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