Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021790X
(575 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77840.1 68414.m09070 eukaryotic translation initiation facto... 94 7e-20
At1g36730.1 68414.m04569 eukaryotic translation initiation facto... 94 7e-20
At5g20920.2 68418.m02485 eukaryotic translation initiation facto... 33 0.14
At5g20920.1 68418.m02484 eukaryotic translation initiation facto... 33 0.14
At5g01620.2 68418.m00078 expressed protein several hypothetical ... 30 1.3
At5g01620.1 68418.m00077 expressed protein several hypothetical ... 30 1.3
At1g52130.1 68414.m05882 jacalin lectin family protein similar t... 30 1.3
At3g07920.1 68416.m00967 eukaryotic translation initiation facto... 29 1.7
At1g61100.1 68414.m06883 disease resistance protein (TIR class),... 29 2.2
At5g01940.1 68418.m00113 eukaryotic translation initiation facto... 29 2.9
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c... 29 2.9
At1g32990.1 68414.m04063 ribosomal protein L11 family protein si... 28 3.9
At1g58250.1 68414.m06624 SABRE, putative similar to SABRE (GI:71... 27 6.8
At5g28630.1 68418.m03500 glycine-rich protein 27 9.0
At3g49140.1 68416.m05370 pentatricopeptide (PPR) repeat-containi... 27 9.0
At3g18810.1 68416.m02389 protein kinase family protein contains ... 27 9.0
At1g64235.1 68414.m07277 protease inhibitor/seed storage/lipid t... 27 9.0
At1g14460.1 68414.m01715 DNA polymerase-related weak similarity ... 27 9.0
>At1g77840.1 68414.m09070 eukaryotic translation initiation factor
5, putative / eIF-5, putative similar to SP|P55876
Eukaryotic translation initiation factor 5 (eIF-5) {Zea
mays}; contains Pfam profiles PF02020:
eIF4-gamma/eIF5/eIF2-epsilon, PF01873: Domain found in
IF2B/IF5
Length = 437
Score = 93.9 bits (223), Expect = 7e-20
Identities = 43/90 (47%), Positives = 60/90 (66%)
Frame = +3
Query: 3 QTQFDFKNERFIVNGSHDSSKLQDLLDGFIRKFVLCPECDNPETELIVSTKRNTISQGCK 182
Q++FD K +VNG+H++SKL LL+ FI+KFV C C NPETE+I+ TK ++ C
Sbjct: 66 QSKFDEKTGTSLVNGAHNTSKLAGLLENFIKKFVQCYGCGNPETEIII-TKTQMVNLKCA 124
Query: 183 ACGYHGQLDFNHKLNTFILKNPPAMIRLCK 272
ACG+ ++D KL FILKNPP ++ K
Sbjct: 125 ACGFISEVDMRDKLTNFILKNPPEQKKVSK 154
>At1g36730.1 68414.m04569 eukaryotic translation initiation factor
5, putative / eIF-5, putative similar to SP|P55876
Eukaryotic translation initiation factor 5 (eIF-5) {Zea
mays}; contains Pfam profiles PF02020:
eIF4-gamma/eIF5/eIF2-epsilon, PF01873: Domain found in
IF2B/IF5
Length = 439
Score = 93.9 bits (223), Expect = 7e-20
Identities = 42/83 (50%), Positives = 57/83 (68%)
Frame = +3
Query: 3 QTQFDFKNERFIVNGSHDSSKLQDLLDGFIRKFVLCPECDNPETELIVSTKRNTISQGCK 182
Q++FD KN +VNG+HD+SKL LL+ FI+K+V C C NPETE+++ TK + C
Sbjct: 66 QSKFDEKNGTSLVNGAHDTSKLAGLLENFIKKYVQCYGCGNPETEILI-TKTQMLQLKCA 124
Query: 183 ACGYHGQLDFNHKLNTFILKNPP 251
ACG+ +D KL +FILKNPP
Sbjct: 125 ACGFLSDVDMRDKLTSFILKNPP 147
>At5g20920.2 68418.m02485 eukaryotic translation initiation factor 2
subunit 2, putative / eIF-2-beta, putative similar to
SP|P41035 Eukaryotic translation initiation factor 2
subunit (eIF-2-beta) {Oryctolagus cuniculus}; contains
Pfam profile PF01873: Domain found in IF2B/IF5
Length = 267
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 27 ERFIVNGSHDSSKLQDLLDGFIRKFVLCPECDNPETELIVSTKRNTISQGCKACG 191
+R +V G + +L +I +V+C C +P+T I+S + C+ CG
Sbjct: 194 QRLVVKGRFAPKNFEGILRRYITDYVICLGCKSPDT--ILSKENRLFFLRCEKCG 246
>At5g20920.1 68418.m02484 eukaryotic translation initiation factor 2
subunit 2, putative / eIF-2-beta, putative similar to
SP|P41035 Eukaryotic translation initiation factor 2
subunit (eIF-2-beta) {Oryctolagus cuniculus}; contains
Pfam profile PF01873: Domain found in IF2B/IF5
Length = 268
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 27 ERFIVNGSHDSSKLQDLLDGFIRKFVLCPECDNPETELIVSTKRNTISQGCKACG 191
+R +V G + +L +I +V+C C +P+T I+S + C+ CG
Sbjct: 195 QRLVVKGRFAPKNFEGILRRYITDYVICLGCKSPDT--ILSKENRLFFLRCEKCG 247
>At5g01620.2 68418.m00078 expressed protein several hypothetical
proteins - Arabidopsis thaliana
Length = 449
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -1
Query: 332 WIQDQSASSVFH---DCPQSVKSLAQPDHGRRVLEYK 231
W+ D S+S H CP LA HGR+ LEY+
Sbjct: 117 WVFDNSSSYPLHKESQCPYMSDQLACQKHGRKDLEYQ 153
>At5g01620.1 68418.m00077 expressed protein several hypothetical
proteins - Arabidopsis thaliana
Length = 449
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -1
Query: 332 WIQDQSASSVFH---DCPQSVKSLAQPDHGRRVLEYK 231
W+ D S+S H CP LA HGR+ LEY+
Sbjct: 117 WVFDNSSSYPLHKESQCPYMSDQLACQKHGRKDLEYQ 153
>At1g52130.1 68414.m05882 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767; contains Pfam profile PF01419
jacalin-like lectin domain
Length = 483
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +3
Query: 168 SQGCKACGYHGQLDFN--HKLNTFILKNPPA 254
SQGC G+HG+ +N H L + PP+
Sbjct: 435 SQGCAIVGFHGRSSYNSIHGLGAYFFPMPPS 465
>At3g07920.1 68416.m00967 eukaryotic translation initiation factor 2
subunit 2, putative / eIF-2-beta, putative similar to
SP|P41035 Eukaryotic translation initiation factor 2
subunit (eIF-2-beta) {Oryctolagus cuniculus}; contains
Pfam profile PF01873: Domain found in IF2B/IF5
Length = 169
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 27 ERFIVNGSHDSSKLQDLLDGFIRKFVLCPECDNPETELIVSTKRNTISQGC 179
+R +V G + LL G+I +V+C C + TE I+S + C
Sbjct: 97 QRLVVRGRFTQRDFESLLRGYILDYVMCIPCKS--TEAILSKENRLFFLRC 145
>At1g61100.1 68414.m06883 disease resistance protein (TIR class),
putative domain signature TIR exists, suggestive of a
disease resistance protein.
Length = 808
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 233 YTQEPACHDPAVQGSSLTEGNRGKRSKRSGPG-SNNTATNGSHEGQETEAKNE 388
Y P H P ++ +RGK SK+ G G S+ ++ S E E+E+ ++
Sbjct: 310 YPYPPMQHMPNQNQGNMPWPSRGKTSKKKGKGDSDGDESSESSESSESESASD 362
>At5g01940.1 68418.m00113 eukaryotic translation initiation factor
2B family protein / eIF-2B family protein similar to
SP|P41035 Eukaryotic translation initiation factor 2
subunit (eIF-2-beta) {Oryctolagus cuniculus}; contains
Pfam profile PF01873: Domain found in IF2B/IF5
Length = 231
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 21 KNERFIVNGSHDSSKLQDLLDGFIRKFVLCPECDNPETEL 140
K +R + G S Q + +I FV+C C +P+T L
Sbjct: 149 KQQRLEIKGLVSSKDFQAVFRKYIDAFVICVCCKSPDTAL 188
>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
contains Pfam PF01422: NF-X1 type zinc finger; similar to
transcriptional repressor NF-X1 (SP:Q12986) [Homo
sapiens]; similar to EST gb|T21002
Length = 1188
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -1
Query: 332 WIQDQSASSVFHDCPQSVKSLAQPDHG 252
W+ D++A +VFHD ++ ++ + +HG
Sbjct: 1027 WLNDKNALAVFHDHARAATAMRRLEHG 1053
>At1g32990.1 68414.m04063 ribosomal protein L11 family protein
similar to chloroplast ribosomal protein L11 GI:21312
from [Spinacia oleracea]
Length = 222
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +3
Query: 210 FNHKLNTFILKNPPAMIRLCKA 275
F+ K TFILK PPA + L KA
Sbjct: 130 FDDKSFTFILKTPPASVLLLKA 151
>At1g58250.1 68414.m06624 SABRE, putative similar to SABRE
(GI:719291) [Arabidopsis thaliana]
Length = 2603
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -1
Query: 329 IQDQSASSVFHDCPQSVKSLAQPDHGRRVLEYKSIQLVIE 210
I DQS++ F CP S S A PD L + L E
Sbjct: 194 ISDQSSNVSFECCPASQASSASPDRSAATLFCDELSLSSE 233
>At5g28630.1 68418.m03500 glycine-rich protein
Length = 148
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 299 GKRSKRSGPGSNNTATNGSHEGQETE 376
GK+ KR G G G EG+E E
Sbjct: 82 GKKEKRGGGGGKEEEGGGEEEGEEEE 107
>At3g49140.1 68416.m05370 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1229
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -1
Query: 326 QDQSASSVFHDCPQSVKSLAQPDHGRRVLEYKSIQLVIEVKLSMVTAGLASLGDGV 159
+ Q+ S +H + SL Q D R+ ++ + +IEV S+GDGV
Sbjct: 804 EKQTGKSRYHPSEEIRASLPQNDGDSRLSPAETTRTIIEVNNKGTLMLTGSIGDGV 859
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = +2
Query: 260 PAVQGSSLTEGNRGKRSKRSGPGSNNTATNGSHEGQETEAKN 385
P+ QG++ +GN G + + +N N ++ G + N
Sbjct: 65 PSPQGNNNNDGNNGNNNNDNNNNNNGNNNNDNNNGNNKDNNN 106
>At1g64235.1 68414.m07277 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
profile PF00234:Protease inhibitor/seed storage/LTP
family; low similarity to SP:P82353 Nonspecific
lipid-transfer protein 2 (LTP 2) {Prunus armeniaca}
Length = 123
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +3
Query: 117 CDNPETELIVSTKRNTISQGCKACGYHGQLDFNHKLNTFILKNPPAM 257
CD +T I K N +S K+CG H L + N NPP +
Sbjct: 73 CDVTKTSKI---KTNVLSSRLKSCGIH-NLKCGNNNNAMRTSNPPVL 115
>At1g14460.1 68414.m01715 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1116
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -1
Query: 356 GCRWSQCCWIQD--QSASSVFHDCPQSVKSLAQ 264
G RWS CC QD + P+S++SL+Q
Sbjct: 394 GRRWSSCCKSQDGEREEEEEGGSTPESIQSLSQ 426
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,967,653
Number of Sequences: 28952
Number of extensions: 204574
Number of successful extensions: 751
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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