Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021788
         (730 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    24   1.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   3.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   3.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   4.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   5.8  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +1

Query: 211 VVQYLPEIVKHGIAGPE----EEEMGILEQYAKYNPVTFLLQ 324
           V Q +P++ K+G  GP+     E++  L +YA+   +  +L+
Sbjct: 285 VSQRVPQLAKNGAYGPDMIYTPEDVKALVEYARIRGIRVVLE 326


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 316 LLQFLATYGWYVVGAIGLAVLVYKKLKPAFD 408
           L +FL+ +G     AIG A+L++  L P  D
Sbjct: 154 LSEFLSLFGTETCPAIGSAILIFVVL-PELD 183



 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 320 NRNVTGLYLAYCSNMPISSSSGPAMPCLTISGRY 219
           N N++ LY+ Y   + I +  GP    L + G +
Sbjct: 875 NENISMLYIGYQIILMIGTVIGPGTIFLMLVGAF 908


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 316 LLQFLATYGWYVVGAIGLAVLVYKKLKPAFD 408
           L +FL+ +G     AIG A+L++  L P  D
Sbjct: 154 LSEFLSLFGTETCPAIGSAILIFVVL-PELD 183



 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 320 NRNVTGLYLAYCSNMPISSSSGPAMPCLTISGRY 219
           N N++ LY+ Y   + I +  GP    L + G +
Sbjct: 875 NENISMLYIGYQIILMIGTVIGPGTIFLMLVGAF 908


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 411 IQPDSTGCGPS*RSGSGTVPH 473
           +QPD   C PS     G  PH
Sbjct: 43  VQPDPGSCDPSVGLRQGIPPH 63


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 221 Y*TTEFNILKL*FQTHGFRL*IHVINDFI*T 129
           Y TTE  +L + F  H FR+ I V    I T
Sbjct: 642 YTTTEKELLGVIFALHKFRIYIQVTKIIIRT 672


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,958
Number of Sequences: 336
Number of extensions: 3260
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)