Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021788
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    27   2.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.6  
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    27   3.6  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    26   4.8  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    26   6.3  
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar...    26   6.3  

>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 647 AVIGTTKLPAGDGGSVLLQCFCPLGSLAF 561
           AV+GT K+    G +V  Q F P G LA+
Sbjct: 222 AVVGTLKIDPLKGPAVAFQRFLPTGPLAY 250


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 691 GRYVEAEAPPLRGR*PSSEPPSFLPVTAAP 602
           G      APP+    PSS PP  +P  +AP
Sbjct: 222 GTPTSTSAPPIPPSIPSSRPPERVPSLSAP 251


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +1

Query: 319 LQFLATYGWYVVGAIGLAVLVYKKLKPAFDKYNLIQQ---DADH 441
           L  +ATYG +++  I    +   + +PA+D Y   +Q   DA+H
Sbjct: 213 LNLIATYGRHLLNLIDDTPVTPGEARPAYDGYETSRQIVMDAEH 256


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 392 NFL*TSTANPIAPTTYQPYVARNCNRNVTGLYLA 291
           N L TS  N IA   ++ YVA N   N   +YLA
Sbjct: 119 NTLNTSKGNVIAFAVHENYVAYNSPTNPGDIYLA 152


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 422 IRLYLSNAGFNFL*TSTANPIAPTTYQPYVARNCNRNVTGLYLAYCSN 279
           ++LY++   F+F  T     + PT YQ  +A NC++  + L L +  N
Sbjct: 277 LQLYIN---FSFTATGAGFTLIPT-YQEVMASNCSKYDSTLMLTFIEN 320


>SPBC2F12.11c |rep2||transcriptional activator
           Rep2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 219

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 23/90 (25%), Positives = 41/90 (45%)
 Frame = +1

Query: 334 TYGWYVVGAIGLAVLVYKKLKPAFDKYNLIQQDADHHKDPDRELSRMEAIQRAREKQQRY 513
           TY   V+G +G+A L+ ++  P      +I     H K     ++R+ +  + +E+++ +
Sbjct: 92  TYASLVIGKLGIAQLIRQQTDPP----QII-----HRKQDKGLMARVLSRSKKQEERENH 142

Query: 514 *SKHRSAHLKHKKSVKNAREPRGQKHWRST 603
            S  R A     +     RE R QK  R T
Sbjct: 143 SSDARDAIKSALRRRMRRREGRVQKALRPT 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,457
Number of Sequences: 5004
Number of extensions: 52621
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)