Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021788
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0063 - 3749675-3749734,3750264-3750309,3750851-3751422,375... 31 0.94
01_07_0030 + 40601063-40601182,40601684-40602116,40602217-406023... 30 1.6
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 30 2.2
01_06_0807 + 32125987-32126029,32126030-32126208,32126760-321269... 29 3.8
10_08_0849 + 21040043-21040199,21040620-21040678,21040925-210424... 29 5.0
08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,413... 29 5.0
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 28 6.6
11_03_0021 + 9010846-9011672,9011753-9013700 28 8.7
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 28 8.7
>09_02_0063 -
3749675-3749734,3750264-3750309,3750851-3751422,
3751531-3751686
Length = 277
Score = 31.1 bits (67), Expect = 0.94
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 244 GIAGPEEEEMGILEQYAKYNPVTFLLQFLATYGWYVVGAIGLAVLVYKKLKPAFD 408
GI GP +E + +L +P + ++ +G+ +G LA VY K KP FD
Sbjct: 135 GIDGPMDELIEMLALGDDIHPSMNKPKVVSIFGFGGLGKTTLAKAVYNKFKPGFD 189
>01_07_0030 +
40601063-40601182,40601684-40602116,40602217-40602326,
40602506-40602550
Length = 235
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/68 (26%), Positives = 28/68 (41%)
Frame = +1
Query: 406 DKYNLIQQDADHHKDPDRELSRMEAIQRAREKQQRY*SKHRSAHLKHKKSVKNAREPRGQ 585
+ Y+L+ + + DP + E + REK ++ S L+ S Q
Sbjct: 78 ETYHLVSRPPPYDTDPRYARVQREGLVSRREKSINL-TQEESLALRRNGSSSGIEHLAAQ 136
Query: 586 KHWRSTEP 609
K W STEP
Sbjct: 137 KKWSSTEP 144
>10_08_0106 +
14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 424 QQDADHHKDPDRELSRMEAIQRAREKQQRY*SKHRS-AHLKHKKSVKNAREPRGQKHWRS 600
++D D ++D DR+ R +R RE++ R ++ S A+ S++ R +
Sbjct: 796 ERDRDQNRDRDRDQERDRDRERDRERESRREARESSGANNDSTTSMRPKARSRSSQPADR 855
Query: 601 TEPPSPA 621
+ PP PA
Sbjct: 856 SAPPPPA 862
>01_06_0807 +
32125987-32126029,32126030-32126208,32126760-32126943,
32127714-32127788,32128079-32128188,32128747-32128965,
32129124-32129279,32129759-32129911,32130223-32130349,
32131598-32131728,32131858-32132139
Length = 552
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 228 W*VLNYRIQYFKTLISNPRFPFVDPRY 148
W V+++ ++ KTL N R+PF D +Y
Sbjct: 133 WFVVDFTLEELKTLKVNQRYPFRDQQY 159
>10_08_0849 +
21040043-21040199,21040620-21040678,21040925-21042494,
21042583-21042710,21042793-21043033,21043160-21043710
Length = 901
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/63 (25%), Positives = 26/63 (41%)
Frame = +1
Query: 448 DPDRELSRMEAIQRAREKQQRY*SKHRSAHLKHKKSVKNAREPRGQKHWRSTEPPSPAGS 627
+PD+ L R ++ R +K + KH + R R QK R+ P P
Sbjct: 287 EPDKSLGRSSILEEKRGSNHELATKAQGKETKHVFFWRKDRSDRKQKPERANR-PQPVSK 345
Query: 628 LVV 636
+V+
Sbjct: 346 IVI 348
>08_01_0469 -
4127950-4127988,4127989-4128264,4128845-4130861,
4131134-4131987
Length = 1061
Score = 28.7 bits (61), Expect = 5.0
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Frame = +1
Query: 202 LNSVVQYLPEIVKHGIAGPEEEEMGILE-------QYAKYNPVTFLLQFLATYGWYVVGA 360
L S+ + L E+V GI GP +E M +L+ + + + + ++ +G+ +G
Sbjct: 158 LLSMYKTLAELV--GIEGPMDELMKMLDIDLPTKKRKIEIDVSVRKPKMVSIFGFGGLGK 215
Query: 361 IGLAVLVYKKLKPAFD 408
LA VY KLKP+FD
Sbjct: 216 TTLAKAVYDKLKPSFD 231
>01_06_0116 -
26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +1
Query: 406 DKYNLIQQDADHHKDPDRELSRMEAIQRAREKQQRY*SKHR---SAHLKHKKSVKNAREP 576
DK ++D + ++ DRE R R REK+ Y SKH K S + E
Sbjct: 227 DKERDRERDRERERERDRERERERQKDREREKKD-YDSKHERYDDGGAKKNGSKASRGEE 285
Query: 577 RGQKHWRSTE 606
G + R TE
Sbjct: 286 DGYSYKRDTE 295
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +1
Query: 424 QQDADHHKDPDRELSRMEAIQRAREKQQRY*SKHRSAHLKHKKSVKNAREPRGQKHWRST 603
++D + ++ DRE R +R RE+Q+ + + KH++ + G K R
Sbjct: 225 ERDKERDRERDRERERERDRERERERQKDREREKKDYDSKHERYDDGGAKKNGSKASRGE 284
Query: 604 E 606
E
Sbjct: 285 E 285
>11_03_0021 + 9010846-9011672,9011753-9013700
Length = 924
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 244 GIAGPEEEEMGILEQYAKYNPVTFL--LQFLATYGWYVVGAIGLAVLVYKKLKPAFD 408
GI GP ++ + +L + A F+ L+ ++ G+ +G LA VY+K+K FD
Sbjct: 171 GIDGPRDKIIKLLRENAADEDCGFVNRLKMVSIAGFGGLGKTTLAKQVYEKIKWQFD 227
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
Frame = +1
Query: 607 PPSPAGSLVVPMTA-----TFLSVEELQP 678
PP P S V+P+TA FLSV+EL P
Sbjct: 362 PPPPVDSPVMPLTALSKVSDFLSVQELHP 390
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,207,192
Number of Sequences: 37544
Number of extensions: 372657
Number of successful extensions: 1162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -