Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021788
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47785| Best HMM Match : Selenoprotein_S (HMM E-Value=0.0012)        37   0.015
SB_53232| Best HMM Match : OAR (HMM E-Value=0.92)                      30   2.2  
SB_46851| Best HMM Match : Vicilin_N (HMM E-Value=0.6)                 30   2.2  
SB_26361| Best HMM Match : fn3 (HMM E-Value=0)                         29   2.9  
SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14)                 29   3.9  
SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064)                  29   3.9  
SB_36136| Best HMM Match : Vicilin_N (HMM E-Value=1.2)                 29   5.1  
SB_21924| Best HMM Match : DUF1090 (HMM E-Value=6.5)                   29   5.1  
SB_48968| Best HMM Match : Dehydrin (HMM E-Value=0.99)                 28   6.7  
SB_40902| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_35667| Best HMM Match : DUF1514 (HMM E-Value=1)                     28   8.9  
SB_12387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_47785| Best HMM Match : Selenoprotein_S (HMM E-Value=0.0012)
          Length = 199

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 20/100 (20%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
 Frame = +1

Query: 301 NPVTFLLQFLATYGWYVVGAIGLAVLVYKKLKPAFDKY--NLIQQDADHHKDPDRELSRM 474
           N + F +  L  YGW++V  I ++ +++ K++P + +      Q+    + DP++E +  
Sbjct: 26  NTLHFAITCLEKYGWFLVLGIVISAVIWSKVRPHWQRMMKKREQEKEIANFDPEKEAALQ 85

Query: 475 EAIQRAREKQQRY*SKHRSAHLKHKKSVKNAREPRGQKHW 594
             I+ +R + Q       +   + KK  +  +     + W
Sbjct: 86  SKIEMSRLRWQEIQDAKAAKFAEEKKKAEEEKRKEVIEDW 125


>SB_53232| Best HMM Match : OAR (HMM E-Value=0.92)
          Length = 806

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +1

Query: 388 KLKPAFDKYNLIQQDADHHKDPDRELSRMEAIQRAREKQQRY*SKHRSAHLKHKKSVKNA 567
           ++K A  K    +Q A   ++ +R+  R  A ++ RE+ +RY  K++    + KK++KN 
Sbjct: 80  EIKKAASKKRRKEQRATAREELERK--RQIAREKTRERVRRYRQKNKEEQGQEKKNLKNT 137

Query: 568 RE 573
            E
Sbjct: 138 GE 139


>SB_46851| Best HMM Match : Vicilin_N (HMM E-Value=0.6)
          Length = 155

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/81 (22%), Positives = 35/81 (43%)
 Frame = +1

Query: 427 QDADHHKDPDRELSRMEAIQRAREKQQRY*SKHRSAHLKHKKSVKNAREPRGQKHWRSTE 606
           Q   H ++P RE +    +QR  +++Q+  S+      K ++ ++  +EP  Q+     E
Sbjct: 40  QQLQHVEEPPREAAPPAELQRQGQERQQNISEEEPEDKKRQRQMRKRQEPPHQQDVEVQE 99

Query: 607 PPSPAGSLVVPMTATFLSVEE 669
                  L        L++EE
Sbjct: 100 AQQKVDDLTRQNRQQDLNIEE 120


>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1898

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
 Frame = +1

Query: 427  QDADHHKDPD-RELSRMEAIQRAREKQQRY*SKHRSAHLKHKKSVKNAREPRGQKHWRST 603
            + +  +++PD R    +    R +  Q+    + +  HL+ + S   A   RG      +
Sbjct: 1768 RSSSSNENPDVRYPGSLSTFPRVQPNQEPNKRRKKPPHLETRLSASRANRDRGHSSSSGS 1827

Query: 604  EPPSPAGSLVVPMTATFLSVEEL--QPPRIDPRRNRNV 711
             P SPA S           VE +  QP R   R  R V
Sbjct: 1828 PPVSPAPSYHSTDAYAMRMVEPIYNQPQRAHDRNGRPV 1865


>SB_14248| Best HMM Match : AAA_5 (HMM E-Value=7.7e-14)
          Length = 1083

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 226 PEIVKHGIAGPEEEEMGILEQYAKYNPVTFLLQFLATYGWYVVGAIGL 369
           P + K+ +   ++  M  LE Y    P+  L Q+    GWY   AIG+
Sbjct: 659 PPLGKYYVLFVDDLNMPALEVYGAQPPIEILRQYCDHKGWYDRKAIGV 706


>SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064)
          Length = 265

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 523 HRSAHLKHKKSVKNAREPRGQKHWRSTEPP--SPAGS 627
           H+S+     KS K  R  R ++H RS  PP   P+GS
Sbjct: 117 HKSSRKSRHKSDKKERASRKRRHSRSESPPVRHPSGS 153


>SB_36136| Best HMM Match : Vicilin_N (HMM E-Value=1.2)
          Length = 155

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/81 (20%), Positives = 34/81 (41%)
 Frame = +1

Query: 427 QDADHHKDPDRELSRMEAIQRAREKQQRY*SKHRSAHLKHKKSVKNAREPRGQKHWRSTE 606
           Q   H ++P RE +    +QR  +++Q+  S+      K ++ ++  +EP  Q+     E
Sbjct: 40  QQLQHVEEPPREAAPPAELQRQGQERQQNISEEEPEDKKRQRQMRKRQEPPHQQDVEVQE 99

Query: 607 PPSPAGSLVVPMTATFLSVEE 669
                  L         ++EE
Sbjct: 100 AQQKVDDLTRQKRQQDFNIEE 120


>SB_21924| Best HMM Match : DUF1090 (HMM E-Value=6.5)
          Length = 133

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = +1

Query: 427 QDADHHKDPDRELSRMEAIQRAREKQQRY*SKHRSAHLKHKKSVKNAREPRGQK 588
           Q   H ++P RE +    +QR  +++Q+  S+      K ++ ++  +EP  Q+
Sbjct: 40  QQLQHVEEPPREAAPPSELQRQGQERQQNISEEEPEDKKRQRQMRKRQEPPHQQ 93


>SB_48968| Best HMM Match : Dehydrin (HMM E-Value=0.99)
          Length = 355

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/62 (27%), Positives = 34/62 (54%)
 Frame = +1

Query: 388 KLKPAFDKYNLIQQDADHHKDPDRELSRMEAIQRAREKQQRY*SKHRSAHLKHKKSVKNA 567
           ++K A  K    +Q A   ++ +R+  R  A ++ RE+ +RY  K++    + KK+++N 
Sbjct: 58  EIKKAASKKRRKEQRATAREELERK--RQIAREKTRERVRRYRQKNKEEQGQEKKNLQNT 115

Query: 568 RE 573
            E
Sbjct: 116 GE 117


>SB_40902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 610 PSPAGSLVVPMTATFLSVEELQPPRIDPRRNRN 708
           P   G  ++P  +T + + +LQ  RIDP +NR+
Sbjct: 263 PGQQGIRIMPGQSTGIQMTKLQTRRIDPFKNRS 295


>SB_35667| Best HMM Match : DUF1514 (HMM E-Value=1)
          Length = 241

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 610 PSPAGSLVVPMTATFLSVEELQPPRIDPRRNRN 708
           P   G  ++P  +T + + +LQ  RIDP +NR+
Sbjct: 14  PGQQGIRIMPGQSTGIQMTKLQTRRIDPFKNRS 46


>SB_12387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1096

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/81 (23%), Positives = 38/81 (46%)
 Frame = +1

Query: 406 DKYNLIQQDADHHKDPDRELSRMEAIQRAREKQQRY*SKHRSAHLKHKKSVKNAREPRGQ 585
           +K+    +DAD     + E  +    +R +E+ +    + R+A  +   SV +  +    
Sbjct: 427 EKHGSDFEDADEEVIVEEENEKES--ERIKEENENVEKEQRTASKEKTASVGSKPKRYSS 484

Query: 586 KHWRSTEPPSPAGSLVVPMTA 648
           +  R+++PP+PA   V P  A
Sbjct: 485 QRQRASQPPAPAVPEVFPEQA 505


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,133,355
Number of Sequences: 59808
Number of extensions: 386656
Number of successful extensions: 1163
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)