Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021788
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12964-10|AAK93849.2|  140|Caenorhabditis elegans Hypothetical p...    36   0.030
AF038611-4|AAB92042.3|  833|Caenorhabditis elegans Homolog of el...    32   0.48 
AF000299-1|AAC47980.1|  210|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U53336-7|AAA96179.1|  642|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>U12964-10|AAK93849.2|  140|Caenorhabditis elegans Hypothetical
           protein F26F4.9a protein.
          Length = 140

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
 Frame = +1

Query: 325 FLATYGWYVVGAIGLAVLVYKK-----LKPAFDKYNLIQQDADHHKDPDRELSRMEAIQR 489
           FL  YGW  V  + L  +++KK     +    ++  LI+Q     +  DRE  +M   + 
Sbjct: 14  FLEVYGWMTVFVVILIYILFKKYIYDLMVAREEERRLIEQKKFDRQVQDREADKM---RL 70

Query: 490 AREKQQR-Y*SKHRSAHLKHKKSVKNAREPRGQKH 591
           AR+KQQR +  K +    K ++ +K   E R +++
Sbjct: 71  ARQKQQREHDEKEKIETSKREEKLKEEAEKRQREY 105


>AF038611-4|AAB92042.3|  833|Caenorhabditis elegans Homolog of elac2
           (cancer susceptibilitylocus) protein 1, isoform a
           protein.
          Length = 833

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
 Frame = +1

Query: 415 NLIQQDADHHKDPDRELSRMEAIQRAREKQQRY*SKHRSAHLKHKK---SVKNAREPRG- 582
           +LI   +   KD + EL  +E+I+    + +R   KH S+HLK ++   S+ N R+    
Sbjct: 19  HLISSTSCLFKDNNEEL--LESIKERIARNRRILQKHSSSHLKAREVNASISNLRQSMAA 76

Query: 583 -QKHWRSTEPPSPAGSLV 633
            QK  ++   P PA S+V
Sbjct: 77  VQKKQKAAHEP-PANSIV 93


>AF000299-1|AAC47980.1|  210|Caenorhabditis elegans Hypothetical
           protein E03H12.5 protein.
          Length = 210

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = +1

Query: 424 QQDADHHKDPDRELSRMEAIQRAREKQQRY*SKHRSAHLKHKKSVKNAREPRGQ 585
           ++DAD  KD +++  + +  +  ++ +++  SK      K KKS K+ RE + +
Sbjct: 119 KKDADEKKDEEKKDDKKDEKKDEKKDEKKEKSKKSKKSSKSKKSKKSKREKKDE 172


>Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical
           protein F09C8.2 protein.
          Length = 762

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = +1

Query: 226 PEIVKHGIAGPEEEEMGILEQYAKYNPVTFLLQFLATYGWYVVGAIGLAVLVYKKLKPAF 405
           P+  +HG  G +EE  G  E+Y   +P   +  F  T       A  L V +    KP  
Sbjct: 201 PQNYQHGNDGDDEESFGEPERYEPMSPTFSIHSFAPTTSTNTAEAEDLEVELINNHKPT- 259

Query: 406 DKYNL 420
            +Y L
Sbjct: 260 PRYQL 264


>U53336-7|AAA96179.1|  642|Caenorhabditis elegans Hypothetical
           protein K07C11.9 protein.
          Length = 642

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +1

Query: 265 EEMGILEQYAKYNPVTFLLQF-LATYGWYVVGAIGLAVLVYKKLKPAFDKYNLIQQDADH 441
           E+ GILE Y K+N V    +  L+T        +G A+++       F +Y      +DH
Sbjct: 513 EKSGILELYQKFNAVNPAEKKPLSTLPGLESTTVGEAIVM-------FTQYLHNHASSDH 565

Query: 442 HKDPDRELSRMEAIQRAREK 501
             D D+++   E  QR RE+
Sbjct: 566 TYDIDQQILASEERQRIRER 585


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,266,505
Number of Sequences: 27780
Number of extensions: 305099
Number of successful extensions: 932
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)