Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021788
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family p...    32   0.45 
At1g71692.1 68414.m08279 MADS-box protein (AGL12) identical to G...    31   0.59 
At5g01520.2 68418.m00066 zinc finger (C3HC4-type RING finger) fa...    30   1.4  
At5g01520.1 68418.m00067 zinc finger (C3HC4-type RING finger) fa...    30   1.4  
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ...    29   2.4  
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit...    29   2.4  
At5g47430.1 68418.m05844 expressed protein                             29   3.2  
At5g27230.1 68418.m03248 expressed protein  ; expression support...    29   3.2  
At5g01280.1 68418.m00037 expressed protein                             29   3.2  
At1g63550.1 68414.m07184 hypothetical protein low similarity to ...    29   3.2  
At4g12400.1 68417.m01960 stress-inducible protein, putative simi...    29   4.2  
At5g63770.1 68418.m08004 diacylglycerol kinase, putative similar...    27   9.6  
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family...    27   9.6  
At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protei...    27   9.6  

>At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family
           protein contains Pfam profile PF03371: PRP38 family
          Length = 355

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +1

Query: 424 QQDADHHKDPDRELSRMEAIQRAREKQQRY*SKHRSAHLKHKKS--VKNAREPRGQK 588
           ++D DH+++ DR+  R    +R R  + R  S+ RS   K  ++  V++  EP+ +K
Sbjct: 264 ERDRDHYRERDRDRERGRDRERDRRDRARRRSRSRSRDRKRHETDDVRDREEPKKKK 320


>At1g71692.1 68414.m08279 MADS-box protein (AGL12) identical to
           GB:AAC49085 GI:862650 from (Arabidopsis thaliana) (Plant
           Cell 7 (8), 1259-1269 (1995))
          Length = 211

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +1

Query: 643 TATFLSVEELQPPRIDPRRNRNVPEED 723
           +ATF + E+LQPP +DP+   NV +++
Sbjct: 82  SATFTAQEQLQPPNLDPKDEINVLKQE 108


>At5g01520.2 68418.m00066 zinc finger (C3HC4-type RING finger)
           family protein similar to MTD2 [Medicago truncatula]
           GI:9294812; contains Pfam profile PF00097: Zinc finger,
           C3HC4 type (RING finger)
          Length = 172

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +1

Query: 190 SFKILNSVVQYLPEIVKHGIAGPEEEEMGILEQYAKYNPVTFLLQFLATY-GWYVVGAIG 366
           S K L + +Q+   +       PEE + G ++    Y+P   L  FL  +   +  GA+G
Sbjct: 8   SLKALEADIQFANTLASEY---PEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCHFAGALG 64

Query: 367 -LAVLVYK 387
            L +L+YK
Sbjct: 65  LLRILIYK 72


>At5g01520.1 68418.m00067 zinc finger (C3HC4-type RING finger)
           family protein similar to MTD2 [Medicago truncatula]
           GI:9294812; contains Pfam profile PF00097: Zinc finger,
           C3HC4 type (RING finger)
          Length = 242

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +1

Query: 190 SFKILNSVVQYLPEIVKHGIAGPEEEEMGILEQYAKYNPVTFLLQFLATY-GWYVVGAIG 366
           S K L + +Q+   +       PEE + G ++    Y+P   L  FL  +   +  GA+G
Sbjct: 8   SLKALEADIQFANTLASEY---PEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCHFAGALG 64

Query: 367 -LAVLVYK 387
            L +L+YK
Sbjct: 65  LLRILIYK 72


>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
           protein 
          Length = 710

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +1

Query: 424 QQDADHHKDPDRELSRMEAIQRAREKQQRY*SKHRSAHL---KHKKSVKNAREPRGQKHW 594
           ++  +H +D +RE  R     R RE+++RY   HR+ H    +H +     R  RG    
Sbjct: 629 ERSREHVRDRERERER----DRHREERERYGGDHRTRHRDEPEHDEEWNRGRSSRGHNKS 684

Query: 595 R 597
           R
Sbjct: 685 R 685


>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
          Length = 589

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +1

Query: 427 QDADHHKDPDRELSRMEAIQRAREKQQRY*SKHRSAHLKHKKSVKNAREPRGQKHWR 597
           +D +  +D DRE SR     R R K ++    HR  H    +     R+     H R
Sbjct: 72  RDREKSRDRDREKSRDRDRDRERSKDRQRDRHHRDRHRDRSRERSEKRDDLDDDHHR 128



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +1

Query: 406 DKYNLIQQDADHHKDPDRELSRMEAIQRAREKQQRY*SKHRSAHLKHKKSVKNAREPRGQ 585
           +K N   +D D +KD DRE  R     R R++++   S+ R    +  K  +  R  R +
Sbjct: 51  EKDNENGRDKDGNKDRDREKDRDREKSRDRDREK---SRDRDRDRERSKDRQRDRHHRDR 107

Query: 586 KHWRSTE 606
              RS E
Sbjct: 108 HRDRSRE 114


>At5g47430.1 68418.m05844 expressed protein 
          Length = 879

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
 Frame = +1

Query: 385 KKLKPAFDKYNLIQQDADHH-KDPDRELSRMEAIQRAREKQQRY*SKHRSAHLKHKK--S 555
           K + P+ D     ++  D   +  DRE SR + + R  ++ +    + RS   +H +  +
Sbjct: 682 KNISPSRDSKRKSERYPDERDRQRDRERSRHQDVDREHDRTRDRRDEDRSRDHRHHRGET 741

Query: 556 VKNAREPRGQKHWRSTEPPSPA 621
            ++    R +    S+EPP PA
Sbjct: 742 ERSQHHHRKRSEPPSSEPPVPA 763


>At5g27230.1 68418.m03248 expressed protein  ; expression supported
           by MPSS
          Length = 948

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = +1

Query: 475 EAIQRAREKQQRY*SKHRSAHLKHKKSVKNAREPRGQKHW----RSTEPPSPAGSLVV 636
           E+ QRA E  Q+   K +S     +KS   +  P  QKH     R TEP +P+ +L V
Sbjct: 447 ESAQRAMEPVQKSYEKRQSTTKGVEKSEAKSSIPYEQKHVIKRPRLTEPTAPSQNLTV 504


>At5g01280.1 68418.m00037 expressed protein
          Length = 460

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = +1

Query: 436 DHHKDPDRELSRMEAIQRAREKQQRY*SKHRSAHLKHKKSVKNAREPRGQKHWRST-EPP 612
           +H   PD  L  M  I R  E   +  S+H++  L    SV   R P      RST  PP
Sbjct: 42  NHLNAPDDNL--MTLISRL-ENYSKEESEHQTTSLHSSSSVSGIRRPSSSSSSRSTSRPP 98

Query: 613 SPAGSLVVP 639
           +P      P
Sbjct: 99  TPTRKSKTP 107


>At1g63550.1 68414.m07184 hypothetical protein low similarity to
           receptor-like protein kinase 5 [Arabidopsis thaliana]
           GI:13506747; contains Pfam profile: PF01657 Domain of
           unknown function DUF26
          Length = 299

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 670 APPLRGR*PSSEPPSFLPVTAAP 602
           APP R   P S PPS LP T +P
Sbjct: 232 APPPRSPPPKSSPPSSLPQTPSP 254


>At4g12400.1 68417.m01960 stress-inducible protein, putative similar
           to sti (stress inducible protein) [Glycine max]
           GI:872116; contains Pfam profile PF00515 TPR Domain
          Length = 530

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 427 QDADHHKDPDRELSRMEAIQRAREKQQR 510
           ++AD  K+P+ E+  ME  +  R+K++R
Sbjct: 199 KEADERKEPEPEMEPMELTEEERQKKER 226


>At5g63770.1 68418.m08004 diacylglycerol kinase, putative similar to
           diacylglycerol kinase, theta (diglyceride kinase, DGK-
           theta, DAG kinase theta). [Homo sapiens]
           SWISS-PROT:P52824
          Length = 712

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 337 YGWYVVGAIGLAVLVYKKLK 396
           +GW V G++GL  ++Y  LK
Sbjct: 23  FGWLVTGSVGLLAVIYTFLK 42


>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 589

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 436 DHHKDPDRELSRMEAIQRAREKQQRY*SKHRSAHLKHKKSVKNAREPRGQK 588
           DH K   +++ R E   RA+    ++   H  +HL H K ++   E R +K
Sbjct: 96  DHEKGASKQVGRRE---RAKPDPSKH---HHRSHLPHSKKIETEEERRLRK 140


>At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|Q27294 RNA-binding protein cabeza {Drosophila
           melanogaster}; contains Pfam profiles: PF00076 RNA
           recognition motif (aka RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 372

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 436 DHHKDPDRELSRMEAIQRAREKQQRY 513
           DHH D DR  SR    +R +E+   Y
Sbjct: 327 DHHYDKDRRRSRSRERERGKERDYDY 352


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,424,707
Number of Sequences: 28952
Number of extensions: 284595
Number of successful extensions: 781
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)