Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021787
         (661 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   1.7  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   2.2  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   3.9  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   3.9  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   3.9  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   3.9  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   3.9  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   3.9  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   3.9  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   3.9  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   9.0  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   9.0  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   9.0  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 298 ETNECYSSSCKNVGRIISCSRY*SW*WNNISSCYCWCVVGF 420
           + NEC S+ C N G  + C +        ++  +C C +GF
Sbjct: 298 DINECLSNPCSNAG-TLDCVQL-------VNDYHCNCKLGF 330



 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 215 CADGISNSFCGIYVAQSD 162
           C+DG S S+C   + + D
Sbjct: 172 CSDGYSGSYCQTEINECD 189



 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 298 ETNECYSSSCKNVG 339
           E NEC S+ C+N G
Sbjct: 184 EINECDSAPCQNGG 197


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 475 PKSPSIGFTGGQNMSTPVDLNNEDALLKAAATSLNSKVVSQHS 603
           P  P+   T  QN+S+P    +  +  + A T+ N+   SQ S
Sbjct: 154 PGKPATSTTS-QNLSSPASSTSSTSSTEKAGTNNNNSKSSQSS 195


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 609 FGTHCSASNSSSNGTY 656
           FG H  AS     GTY
Sbjct: 346 FGVHAPASGGGKEGTY 361


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 475 PKSPSIGFTGGQNMSTPVDLNNEDALLKAAATSLNSKVVSQHS 603
           P  P+   T  QN+S+P    +  +  + A T+ N+    Q S
Sbjct: 154 PGKPATS-TASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSS 195


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 475 PKSPSIGFTGGQNMSTPVDLNNEDALLKAAATSLNSKVVSQHS 603
           P  P+   T  QN+S+P    +  +  + A T+ N+    Q S
Sbjct: 154 PGKPATS-TASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSS 195


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 475 PKSPSIGFTGGQNMSTPVDLNNEDALLKAAATSLNSKVVSQHS 603
           P  P+   T  QN+S+P    +  +  + A T+ N+    Q S
Sbjct: 154 PGKPATS-TASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSS 195


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 475 PKSPSIGFTGGQNMSTPVDLNNEDALLKAAATSLNSKVVSQHS 603
           P  P+   T  QN+S+P    +  +  + A T+ N+    Q S
Sbjct: 154 PGKPATS-TASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSS 195


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 475 PKSPSIGFTGGQNMSTPVDLNNEDALLKAAATSLNSKVVSQHS 603
           P  P+   T  QN+S+P    +  +  + A T+ N+    Q S
Sbjct: 110 PGKPATS-TASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSS 151


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 475 PKSPSIGFTGGQNMSTPVDLNNEDALLKAAATSLNSKVVSQHS 603
           P  P+   T  QN+S+P    +  +  + A T+ N+    Q S
Sbjct: 154 PGKPATS-TASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSS 195


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 475 PKSPSIGFTGGQNMSTPVDLNNEDALLKAAATSLNSKVVSQHS 603
           P  P+   T  QN+S+P    +  +  + A T+ N+    Q S
Sbjct: 154 PGKPATS-TASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSS 195


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 484 PSIGFTGGQNMSTPVDLNN 540
           P I  T G N +TP   NN
Sbjct: 119 PDISSTRGNNNNTPSATNN 137


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 484 PSIGFTGGQNMSTPVDLNN 540
           P I  T G N +TP   NN
Sbjct: 67  PDISSTRGNNNNTPSATNN 85


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 484 PSIGFTGGQNMSTPVDLNN 540
           P I  T G N +TP   NN
Sbjct: 250 PDISSTRGNNNNTPSATNN 268


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,338
Number of Sequences: 336
Number of extensions: 3113
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)