Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021787
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 124 2e-29
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 114 1e-26
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 99 5e-22
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 95 1e-20
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 94 1e-20
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 89 4e-19
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 77 3e-15
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 75 7e-15
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 38 0.002
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 29 0.59
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 27 1.8
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 4.2
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 26 5.5
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.3
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 25 9.7
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 124 bits (298), Expect = 2e-29
Identities = 57/84 (67%), Positives = 72/84 (85%)
Frame = +2
Query: 260 GEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 439
GEV +TNDGATILK +SV+HPAAKMLV+LS AQD+EAGDGTTSVV++AG++L AEKLL+
Sbjct: 53 GEVILTNDGATILKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLK 112
Query: 440 KGIHPTVISDGFQKALQLALQVVK 511
KGIHPTVI++ FQ+A + +K
Sbjct: 113 KGIHPTVIAESFQRAAGFTVDCMK 136
Score = 64.9 bits (151), Expect = 1e-11
Identities = 28/39 (71%), Positives = 36/39 (92%)
Frame = +3
Query: 135 YKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQ 251
++D+ KP ++RLSNI AA++VADAIRTSLGP+GMDKMIQ
Sbjct: 11 FQDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQ 49
Score = 56.4 bits (130), Expect = 3e-09
Identities = 25/45 (55%), Positives = 38/45 (84%)
Frame = +1
Query: 526 VDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIV 660
++L++ ++LL+AA TSLNSK+VSQ+S +LAPIAV A+ V++P V
Sbjct: 142 IELSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDAVLKVIDPRV 186
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 114 bits (274), Expect = 1e-26
Identities = 53/84 (63%), Positives = 69/84 (82%)
Frame = +2
Query: 251 STNGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEK 430
S +GE+T+TNDGATIL QM V H AK+LV+LS++QD E GDGTT VVV+AGALL+ AE
Sbjct: 65 SPDGEITVTNDGATILDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEA 124
Query: 431 LLQKGIHPTVISDGFQKALQLALQ 502
L+ KGIHP I+DG++KA Q+A++
Sbjct: 125 LIDKGIHPIRIADGYEKACQVAVK 148
Score = 39.9 bits (89), Expect = 3e-04
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +3
Query: 171 SNINAAKAVADAIRTSLGPRGMDKMIQAP 257
S+I A K VA+ +RTSLGPRG+DK++ +P
Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKILISP 66
Score = 31.1 bits (67), Expect = 0.15
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +1
Query: 514 MSTPVDLNNEDA--LLKAAATSLNSKVVSQHSTILAPIAVQAIRAVME 651
+S VD + E+ L ++A TSL SKVVS+ A IAV A+ +V +
Sbjct: 153 ISDVVDFSPENTTNLFRSAKTSLGSKVVSKAHDHFANIAVDAVLSVAD 200
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 99.1 bits (236), Expect = 5e-22
Identities = 46/84 (54%), Positives = 62/84 (73%)
Frame = +2
Query: 260 GEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 439
GEV I+NDGATI+K + ++HPAAK LV+++RAQD E GDGTTSVVV AG LL A ++
Sbjct: 58 GEVVISNDGATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVE 117
Query: 440 KGIHPTVISDGFQKALQLALQVVK 511
G+ +I G++KA QLA+ +K
Sbjct: 118 DGVSSHLIIRGYRKAAQLAVNKIK 141
Score = 39.9 bits (89), Expect = 3e-04
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +3
Query: 141 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMI 248
D S+ LSNINA AV D IRT+LGP G DK++
Sbjct: 18 DDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLM 53
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 94.7 bits (225), Expect = 1e-20
Identities = 42/83 (50%), Positives = 61/83 (73%)
Frame = +2
Query: 260 GEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 439
G V +TNDG IL+++ V HPAAK ++EL+R QD E GDGTTSV+++AG +L +A LL
Sbjct: 53 GSVLLTNDGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLD 112
Query: 440 KGIHPTVISDGFQKALQLALQVV 508
+ IHP V+ F++AL+ AL ++
Sbjct: 113 RKIHPVVMIRSFKQALEDALSII 135
Score = 44.4 bits (100), Expect = 1e-05
Identities = 21/32 (65%), Positives = 25/32 (78%)
Frame = +3
Query: 165 RLSNINAAKAVADAIRTSLGPRGMDKMIQAPM 260
++SNI AAKAVAD IRT LGPR M KM+ P+
Sbjct: 21 QMSNIQAAKAVADVIRTCLGPRAMLKMLLDPV 52
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/44 (22%), Positives = 29/44 (65%)
Frame = +1
Query: 514 MSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAV 645
++ PV++++ + + T + +K+V++ S ++ +A++A+R V
Sbjct: 138 ITLPVNVDDNAEMFRLIRTCIGTKLVARWSDLMCHLALRAVRTV 181
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 94.3 bits (224), Expect = 1e-20
Identities = 45/81 (55%), Positives = 61/81 (75%)
Frame = +2
Query: 260 GEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 439
G+VT+TNDGATIL + V HPA K+LVEL++ QD E GDGTTSVV+IA LL A +L++
Sbjct: 55 GDVTVTNDGATILSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVK 114
Query: 440 KGIHPTVISDGFQKALQLALQ 502
IHPT I G++ A++ A++
Sbjct: 115 NKIHPTTIITGYRLAIREAVK 135
Score = 37.9 bits (84), Expect = 0.001
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +3
Query: 141 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMI 248
+K D+R N+ A A+A+ +++SLGP G+DKM+
Sbjct: 15 EKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKML 50
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 89.4 bits (212), Expect = 4e-19
Identities = 42/88 (47%), Positives = 63/88 (71%)
Frame = +2
Query: 248 SSTNGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAE 427
S+++G++ +TNDGATILK +++ + AAK+LV +S+ QD E GDGTTSV V A LL AE
Sbjct: 51 SNSSGDIVVTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAE 110
Query: 428 KLLQKGIHPTVISDGFQKALQLALQVVK 511
++ IHP VI DG++ A + A+ ++
Sbjct: 111 IMVNAKIHPQVIIDGYRIATKTAIDALR 138
Score = 37.1 bits (82), Expect = 0.002
Identities = 15/30 (50%), Positives = 24/30 (80%)
Frame = +3
Query: 165 RLSNINAAKAVADAIRTSLGPRGMDKMIQA 254
RLS+ A AV D ++++LGP+GMDK++Q+
Sbjct: 22 RLSSFVGAIAVGDLVKSTLGPKGMDKILQS 51
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 76.6 bits (180), Expect = 3e-15
Identities = 35/83 (42%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Frame = +2
Query: 272 ITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIH 451
+TND ATI++++ VIHPAAK++V+ ++ Q+ E GD VVV G LL AE +++ G+
Sbjct: 64 LTNDAATIIRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLT 123
Query: 452 PTVISDGFQKALQLALQVV-KIC 517
P I+ G++ AL ++V+ +IC
Sbjct: 124 PLEIAKGYEMALSHTMEVLEEIC 146
Score = 33.1 bits (72), Expect = 0.036
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 84 IMAPKAGGDAIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMI 248
+ PKA G + Y+ D + N NA + +++ RTSLGP G +K++
Sbjct: 3 LRVPKASGPQLFREG--YRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIV 55
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 75.4 bits (177), Expect = 7e-15
Identities = 34/80 (42%), Positives = 51/80 (63%)
Frame = +2
Query: 260 GEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQ 439
G + +T DG +L +M + +P A + + + AQD GDGTTSV ++ G LL AE ++
Sbjct: 50 GAIKLTKDGKVLLTEMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIR 109
Query: 440 KGIHPTVISDGFQKALQLAL 499
+G+HP++ISDGF A AL
Sbjct: 110 EGLHPSLISDGFNLAKNEAL 129
Score = 30.3 bits (65), Expect = 0.26
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 538 NEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEP 654
+ + LL A TSL++K+ S+ LAP V AI + P
Sbjct: 142 DREVLLNVAKTSLSTKISSKVVESLAPAVVDAILTIRRP 180
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 174 NINAAKAVADAIRTSLGPRGMDKMI 248
NI+AA + D ++++LGP G KM+
Sbjct: 21 NISAAIGLQDVLKSNLGPTGTTKML 45
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Frame = +2
Query: 260 GEVTITNDGATILKQMSVIHP----AAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAE 427
G IT DG T+ + +S+ A+++ +++ + AGDGTT+ V+ A+
Sbjct: 76 GSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAIFSETV 135
Query: 428 KLLQKGIHPTVISDGFQKALQLALQVVK 511
+ + G +P + G Q A+ ++ ++
Sbjct: 136 RNVAAGCNPMDLRRGIQLAVDNVVEFLQ 163
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 29.1 bits (62), Expect = 0.59
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +3
Query: 564 CNITKFQSSFTTLNYFGTHCSASNSS 641
CNI KF SSF T N F T SS
Sbjct: 276 CNIPKFNSSFKTSNDFFTFTKTEESS 301
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 307 ECYSSSCKNVGRIISCSRY*SW*WNNISSCYCWCVVGF 420
EC S K+ ++I+C R+ S+ N I S Y +GF
Sbjct: 87 ECLLSGGKSFAKVINCLRFPSFLINFIFSVYQTSALGF 124
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 517 STPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPI 657
ST D L+ + N ++ H +ILAP +RA++ P+
Sbjct: 2537 STSQDSRRLALLIIRVVSKENYSLIKPHISILAPAIFGCVRAIVIPV 2583
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 258 LVLESSYPFHEALSLCGWHQQQLLR 184
L+LES+ FH G+HQ+QL R
Sbjct: 253 LLLESTDEFHYEQGNLGFHQRQLAR 277
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 427 LSRIQQRTSNNNY*CCSITSFNI 359
LS Q TS NN+ C SI +F I
Sbjct: 177 LSNRQLNTSENNWTCLSIENFGI 199
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -2
Query: 657 NRFHYCSNC--LHCNGCQNS*VL*NYFGI 577
NR H+C NC + CN C + + + GI
Sbjct: 187 NRKHHCRNCGGVFCNQCSSKTLSLPHLGI 215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,590
Number of Sequences: 5004
Number of extensions: 48574
Number of successful extensions: 158
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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