Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021787
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                 108   5e-24
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   93   2e-19
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   2e-16
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              73   2e-13
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   2e-12
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               64   1e-10
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      55   6e-08
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              50   2e-06
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)            40   0.002
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)                37   0.017
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)                  30   1.9  
SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)                 28   5.9  

>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score =  108 bits (259), Expect = 5e-24
 Identities = 52/84 (61%), Positives = 67/84 (79%)
 Frame = +2

Query: 251 STNGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEK 430
           S +GEVT+TNDGATIL  M V H  AK++VELS++QD E GDGTT VVV+AGALL+ AE+
Sbjct: 61  SPDGEVTVTNDGATILGMMEVDHQIAKLMVELSKSQDNEIGDGTTGVVVLAGALLEHAEQ 120

Query: 431 LLQKGIHPTVISDGFQKALQLALQ 502
           LL  GIHP  I+DG++ A ++AL+
Sbjct: 121 LLDWGIHPIRIADGYELAAKIALE 144



 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 18/29 (62%), Positives = 25/29 (86%)
 Frame = +3

Query: 171 SNINAAKAVADAIRTSLGPRGMDKMIQAP 257
           S+I AA+AVA  ++TSLGP+GMDKM+ +P
Sbjct: 34  SHILAARAVASILKTSLGPKGMDKMMVSP 62



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 19/43 (44%), Positives = 31/43 (72%)
 Frame = +1

Query: 523 PVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVME 651
           PVD +N+++L++ A T+L SK+VS+    LA IAV A+ +V +
Sbjct: 154 PVDKDNKESLIQTAMTTLGSKIVSRCHRPLAEIAVDAVLSVAD 196


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 44/80 (55%), Positives = 58/80 (72%)
 Frame = +2

Query: 257 NGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLL 436
           NG + +TNDGATILK + + +PAAK+LVELS+ QD E GDGTTSV V+   LL  AEKL+
Sbjct: 55  NGNIQVTNDGATILKSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLV 114

Query: 437 QKGIHPTVISDGFQKALQLA 496
              IHP  I  G++K+++ A
Sbjct: 115 SCKIHPQTIVAGWRKSVKAA 134



 Score = 37.1 bits (82), Expect = 0.013
 Identities = 14/38 (36%), Positives = 27/38 (71%)
 Frame = +3

Query: 141 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQA 254
           ++ +    RLS+   A A+ D ++++LGP+GMDK++Q+
Sbjct: 14  EEERAETARLSSFVGAIAIGDLVKSTLGPKGMDKILQS 51


>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 36/80 (45%), Positives = 56/80 (70%)
 Frame = +2

Query: 272 ITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIH 451
           +TNDG  IL+++ V HPAAK ++E+SR QD E GDGTTSV+++AG  +  AE  L++ +H
Sbjct: 1   MTNDGNAILREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMH 60

Query: 452 PTVISDGFQKALQLALQVVK 511
           PT I   ++ A+   + ++K
Sbjct: 61  PTQIIAAYRLAMDDMIDILK 80


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 33/53 (62%), Positives = 43/53 (81%)
 Frame = +3

Query: 93  PKAGGDAIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQ 251
           P+A     +++ + +KDK KP +IR++NI AAKAVADAIRTSLGP+GMDKMIQ
Sbjct: 2   PEAKAGRNQSHKTAFKDKEKPQEIRMTNITAAKAVADAIRTSLGPKGMDKMIQ 54



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +2

Query: 257 NGEVTITNDGATI 295
           NG+VTITNDGATI
Sbjct: 57  NGDVTITNDGATI 69


>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 30/70 (42%), Positives = 48/70 (68%)
 Frame = +2

Query: 302 QMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQK 481
           ++ V HPAAK ++E+SR QD E GDGTTSV+++AG  +  AE  L++ +HPT I   ++ 
Sbjct: 208 KIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRL 267

Query: 482 ALQLALQVVK 511
           A+   + ++K
Sbjct: 268 AMDDMIDILK 277


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 29/81 (35%), Positives = 51/81 (62%)
 Frame = +2

Query: 269 TITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGI 448
           T+   G   ++   + HP A ++  ++ AQD   GDGTTS V+I G LL  A+  + +G+
Sbjct: 157 TMNPFGQNGVQNSQIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGL 216

Query: 449 HPTVISDGFQKALQLALQVVK 511
           HP ++++GF+ A + AL+V++
Sbjct: 217 HPRLVTEGFEVAKKKALEVLE 237


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 27/51 (52%), Positives = 35/51 (68%)
 Frame = +2

Query: 344 LSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLA 496
           LS+ QD E GDGTTSV V+A  LL  AEKL+   IHP  I  G++K+++ A
Sbjct: 2   LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAA 52



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 544 DALLKAAATSLNSKVVSQHSTILAPIAVQAI 636
           D L+  A T+L+SK++ QH    A +AV A+
Sbjct: 72  DDLMNIARTTLSSKILVQHRDHFAKLAVDAV 102


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 19/36 (52%), Positives = 30/36 (83%)
 Frame = +2

Query: 260 GEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIE 367
           G+ TI+NDGATI+  + ++HPAAK LV+++++QD E
Sbjct: 689 GKATISNDGATIINLLDIVHPAAKTLVDIAKSQDAE 724



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 20/36 (55%), Positives = 28/36 (77%)
 Frame = +3

Query: 141 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMI 248
           D S+     +SNI+A + +ADA+RT+LGPRGMDK+I
Sbjct: 649 DASQGIPQLISNIDACQFIADAVRTTLGPRGMDKLI 684


>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
          Length = 563

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 16/50 (32%), Positives = 32/50 (64%)
 Frame = +2

Query: 251 STNGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVI 400
           S++G + ITN G+ IL+ +++ +P  +M+VE +R+     G G +  ++I
Sbjct: 31  SSSGNILITNSGSMILESLTMGNPTERMIVEAARSLSGRTGSGASYFIII 80


>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
          Length = 278

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
 Frame = +2

Query: 260 GEVTITNDGATILKQMSVIHP----AAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAE 427
           G   IT DG T+ K + +        A+++ +++   + EAGDGTT+  V+A ++     
Sbjct: 101 GGPKITKDGVTVAKAIELKDKYQNIGARLVQDVANNTNEEAGDGTTTATVLARSIATEGF 160

Query: 428 KLLQKGIHPTVIS 466
             + KG +P  +S
Sbjct: 161 LHVSKGANPQEVS 173


>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
          Length = 559

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +2

Query: 323 AAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKAL 487
           A++ML E+SR      GD +     ++G  L   EKLL+  +HP  I  G  K L
Sbjct: 238 ASQMLYEVSRL----LGDKSIVASFVSGVDLSRQEKLLKDSLHPPRIVIGTPKRL 288


>SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = -2

Query: 444 PF*RSFSAESNNAPAITTTDVVPSPASIS*ARDNSTNIFAAG*ITLICFKIVAPSLVIVT 265
           P    ++   N  P  T  +   SP  +S   DN T+         I   I+ P+ + +T
Sbjct: 97  PCFEGYAENDNECPICTPENKYVSPIELSSQVDNLTSYNNLSNRLTITSPIIYPTALPIT 156

Query: 264 SPLVLESSYPFH 229
           SP++  ++ P +
Sbjct: 157 SPIIYPTALPIN 168


>SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1115

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +2

Query: 236 G*DDSSTNGEVTITND---GATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAG 406
           G D +ST+G   I+N    G + ++Q+  +    K++VEL +A +I     +    V+AG
Sbjct: 664 GVDTASTDGTFDISNADRLGTSEVEQVQTVVDGVKLMVELEKALEINVNVKSFIHSVVAG 723


>SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)
          Length = 1219

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +3

Query: 105  GDAIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAPMEKL 269
            G    AN+S  K   +P +I  +N++  KA ADA   +L   G   ++ +P E L
Sbjct: 1019 GTTTMANTSSNKGLPRP-EIDNANVSELKAKADASNVALTSAGSAAILLSPQEFL 1072


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,463,338
Number of Sequences: 59808
Number of extensions: 354157
Number of successful extensions: 874
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)