Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021787
         (661 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            27   0.69 
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            27   0.69 
AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR prot...    25   1.6  
AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    24   4.9  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   6.5  
AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           23   8.5  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   8.5  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 26.6 bits (56), Expect = 0.69
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 371  GDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQL-ALQV 505
            GD T  V+     L+ S+  L  +  HP  I   F+K +Q+ ALQ+
Sbjct: 876  GDWTGVVLPFPANLIKSSSSLFDRFDHPEEIMRDFKKGVQMDALQM 921


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 26.6 bits (56), Expect = 0.69
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 371  GDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQL-ALQV 505
            GD T  V+     L+ S+  L  +  HP  I   F+K +Q+ ALQ+
Sbjct: 877  GDWTGVVLPFPANLIKSSSSLFDRFDHPEEIMRDFKKGVQMDALQM 922


>AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR
           protein.
          Length = 502

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 313 NTHLFQNCCSIISYCNFSI 257
           N +L QNCC +    NF I
Sbjct: 406 NIYLVQNCCQLFFMTNFGI 424


>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
           growth factor receptorprotein.
          Length = 1433

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 558 GSCNITKFQSSFTTLNYF 611
           G  NI     +FTTLNYF
Sbjct: 368 GFINIQAHHPNFTTLNYF 385


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 72  LNINIMAPKAGGDAIKANSSVYKDKSKPTDIR 167
           LN+N+   +AGG ++  N S     S+P+  R
Sbjct: 879 LNLNLDRSEAGGRSLCTNGSSSGRDSQPSSAR 910


>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 432 SFSAESNNAPAITTTDVVPSPASIS*ARDN 343
           +FS E+N+   +   ++ P+ ASI+   DN
Sbjct: 663 TFSVENNSFGVLKVHELKPNGASIAVTEDN 692


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 410 LLDSAEKLLQKGIHPTVISDGFQKALQLALQVVKICQ 520
           LL+  EKL  + I      D  + AL +A   +KICQ
Sbjct: 462 LLEEKEKLQTELIELKRAVDESKSALSIAESELKICQ 498


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 643,172
Number of Sequences: 2352
Number of extensions: 11827
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65650335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)