Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021786
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   5.5  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   7.3  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   7.3  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   7.3  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   7.3  
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy...    25   9.6  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    25   9.6  

>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 177 YWPRDTKSICLSFGTDIDFIEFLE 248
           YWP+D  ++   FGT+ D I+  +
Sbjct: 104 YWPQDLYTLNPHFGTEQDLIDLAD 127


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 113 TRLSLRISKNRKYNF*ITVSNLLATGYQIYLSIIWN*HRFYRIP 244
           TRL+ +I  N      I  SN +A G+ I   I+W    F+++P
Sbjct: 179 TRLNKKIILNTIVTSFICWSNAIALGFCIIACILWR-MIFFKVP 221


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 113 TRLSLRISKNRKYNF*ITVSNLLATGYQIYLSIIWN*HRFYRIP 244
           TRL+ +I  N      I  SN +A G+ I   I+W    F+++P
Sbjct: 179 TRLNKKIILNTIVTSFICWSNAIALGFCIIACILWR-MIFFKVP 221


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 113 TRLSLRISKNRKYNF*ITVSNLLATGYQIYLSIIWN*HRFYRIP 244
           TRL+ +I  N      I  SN +A G+ I   I+W    F+++P
Sbjct: 179 TRLNKKIILNTIVTSFICWSNAIALGFCIIACILWR-MIFFKVP 221


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 113 TRLSLRISKNRKYNF*ITVSNLLATGYQIYLSIIWN*HRFYRIP 244
           TRL+ +I  N      I  SN +A G+ I   I+W    F+++P
Sbjct: 179 TRLNKKIILNTIVTSFICWSNAIALGFCIIACILWR-MIFFKVP 221


>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 166

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 309 LGNNFRIIQLWVAMFKVLYHTRGIL*N 229
           + N+ R+IQLW ++     HT+ ++ N
Sbjct: 40  INNSNRLIQLWSSVLSQTEHTQNLILN 66


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 577 RTVRTMN*IPANVFLYVPNTNTRAQL 654
           ++++T N  P N  +Y P TN  + L
Sbjct: 183 KSIKTWNYQPKNALMYTPETNHSSSL 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,023
Number of Sequences: 5004
Number of extensions: 51193
Number of successful extensions: 93
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)