Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021786
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81043-1|CAB02799.1|  755|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine re...    29   2.9  
AF026209-6|AAB71281.1|  340|Caenorhabditis elegans Serpentine re...    28   6.7  

>Z81043-1|CAB02799.1|  755|Caenorhabditis elegans Hypothetical
           protein C29F3.1 protein.
          Length = 755

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -1

Query: 259 FVPYSRNSIKSMSVPNDRQIDLVSR 185
           F  Y    IKS+S P DRQ+ LVSR
Sbjct: 648 FEKYKLTPIKSVSSPEDRQLRLVSR 672


>AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 23 protein.
          Length = 293

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +1

Query: 283 LYYSKIIT*KF-GITQIIKLKQISSSTIQYYD-IKHLNILFGLLILETGVTRA 435
           L+YS+ I   F GIT  I L  + ++     + I H  +L GLL+   G+++A
Sbjct: 46  LFYSRFIFDAFYGITVTIFLSLMIAANFNNLETINHFTLLSGLLVWNVGISQA 98


>AF026209-6|AAB71281.1|  340|Caenorhabditis elegans Serpentine
           receptor, class j protein24 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 345 LF*FNNLSDTKFLGNNFRIIQLWVAMFKVLYHTRGIL*NLC 223
           LF F  L+DTK +  N+R + L+ A+F +      +L  LC
Sbjct: 24  LFIFLILNDTKLMLGNYRWLMLFFAIFNMSCSVADMLVPLC 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,775,084
Number of Sequences: 27780
Number of extensions: 273805
Number of successful extensions: 547
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)