Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021786
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    25   0.48 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.8  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   7.8  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 363 TILRHKTFKYIIRSTYSGNRGDQSKKLLPIKRYLAGHRKVSVTISLING 509
           TI  +  +KY   + Y+ N  + +KKL   K Y+    ++ V + +  G
Sbjct: 89  TIHNNNNYKYNYNNKYNYNNNNYNKKLY-YKNYIINIEQIPVPVPVYYG 136


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 44  VVFSFVSSWLEW 79
           V  SF++ WLEW
Sbjct: 315 VTSSFITFWLEW 326


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 44  VVFSFVSSWLEW 79
           V  SF++ WLEW
Sbjct: 284 VTSSFITFWLEW 295


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 44  VVFSFVSSWLEW 79
           V  SF++ WLEW
Sbjct: 335 VTSSFITFWLEW 346



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 603 DLIHCSNRSSRSF*D*TNFYRNVN 532
           D    SNRSS S  D  N Y+N N
Sbjct: 96  DATGLSNRSSTSSNDPKNQYKNQN 119


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 44  VVFSFVSSWLEW 79
           V  SF++ WLEW
Sbjct: 284 VTSSFITFWLEW 295


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -3

Query: 113 FNIHSIWPKTLTTRARRKQMK 51
           F++H ++P+ L  R  +K ++
Sbjct: 36  FSVHQVYPENLIPRLAKKAIQ 56


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 7   FFCYSSITMRQRGCVFICFLLARVVKVL 90
           F  YSS++     C+ + FL   + K L
Sbjct: 343 FIIYSSLSSFYIPCIIMVFLYYNIFKAL 370


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 259 NFKHCNPKLYYSKI 300
           N+K+ N KLYY+ I
Sbjct: 328 NYKNYNKKLYYNII 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,795
Number of Sequences: 438
Number of extensions: 3586
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)