Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021785
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    45   1e-05
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    43   4e-05
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    40   4e-04
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    40   5e-04
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    38   0.002
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    29   0.52 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   3.7  
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb...    26   4.9  
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.4  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    26   6.4  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    25   8.5  

>SPBC28E12.03 |rga4||GTPase activating protein
            Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 27/82 (32%), Positives = 39/82 (47%)
 Frame = +3

Query: 9    EGLYRKSGLSSKVXXXXXXXXXXXXXGVEKLDSYAVHVRASVLKSFFRELPEPLLTFDLY 188
            EGLYRKSG +S++                  D  AV    SV K + R LP P++T+D Y
Sbjct: 779  EGLYRKSGATSQMKKIVALLRNEDTVLDPSEDISAV---TSVFKQYLRNLPNPIITYDQY 835

Query: 189  DDFILAAQISDPQERVSSIFTI 254
              FI AA  +  Q+++     +
Sbjct: 836  FPFITAANCASFQDKLDGFIMV 857



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 22/62 (35%), Positives = 36/62 (58%)
 Frame = +2

Query: 206  CSDIRSPGASFVNIYNIKKLPKPNFDLVERLIFHLARVALQEEHNRMGPNALAIVFAPCI 385
            C+  +     F+ +  IK LP  + ++++ +I HLARVA     NRM    LA+VF+P +
Sbjct: 844  CASFQDKLDGFIMV--IKSLPPAHAEILQLIIRHLARVAAYSHANRMTSKNLAVVFSPTL 901

Query: 386  LR 391
            +R
Sbjct: 902  IR 903


>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 18/37 (48%), Positives = 28/37 (75%)
 Frame = +3

Query: 126  ASVLKSFFRELPEPLLTFDLYDDFILAAQISDPQERV 236
            A++LK F RELP+PLLTF L+  FI ++++   +ER+
Sbjct: 917  AALLKKFLRELPDPLLTFKLFGLFITSSKLESEEERM 953


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = +3

Query: 9   EGLYRKSGLSSKVXXXXXXXXXXXXXGVEKLDSYA--VHVRASVLKSFFRELPEPLLTFD 182
           +G+YR    S++V              +   + Y   VH  A +LK FFREL EPL+  +
Sbjct: 538 QGIYRVPSSSARVNMLRSQFENNPLLQLHTPEDYENDVHAVADLLKIFFRELREPLIPDN 597

Query: 183 LYDDFILAAQISDPQERVSSI 245
              DFI A  + D   R  ++
Sbjct: 598 HQRDFIDAGNVEDESRRRDAV 618



 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 254 IKKLPKPNFDLVERLIFHLARVALQEEHNRMGPNALAIVFAPCILR 391
           I  LP  N+  +  L  HLA++    + N+M  N LAI++ P I++
Sbjct: 622 INDLPDANYSTIRHLTIHLAKIKENSDVNKMSTNNLAIIWGPTIIK 667


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = +2

Query: 254  IKKLPKPNFDLVERLIFHLARVALQEEHNRMGPNALAIVFAPCI 385
            I KLP  NF L++ L+ HL R+   E+ N+M    + IVF+P +
Sbjct: 1185 ISKLPPENFALLDSLLHHLRRIIAFEKVNKMNIRNVCIVFSPTL 1228


>SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 969

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 23/82 (28%), Positives = 41/82 (50%)
 Frame = +3

Query: 9    EGLYRKSGLSSKVXXXXXXXXXXXXXGVEKLDSYAVHVRASVLKSFFRELPEPLLTFDLY 188
            EG+YR SG +S+V              +E L S  +    SVLK++   LPEP++    Y
Sbjct: 812  EGIYRISGSASQVRVLVDEFENGSIR-MEHLTS-DLFACTSVLKTYLHRLPEPVIPGTQY 869

Query: 189  DDFILAAQISDPQERVSSIFTI 254
            ++ + A +I   +E++  +  +
Sbjct: 870  EELLEAEKIEKEEEKIERVVEV 891



 Score = 31.1 bits (67), Expect = 0.17
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 254  IKKLPKPNFDLVERLIFHLARVALQEEHNRMGPNALAIVFAPCILR 391
            +K L   +  +   LI HL RV    E N M    ++ VFAP ++R
Sbjct: 892  MKTLHPAHLSVFRFLIAHLGRVCKHAEKNLMNSKNVSTVFAPTLMR 937


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 9   EGLYRKSGLSSKVXXXXXXXXXXXXXGVE-KLDSYAVHVRASVLKSFFRELPEPLLTFDL 185
           +G++R +G S ++             G     + Y VH  A+V + F   +PE ++  + 
Sbjct: 86  KGIFRVNGSSKRIQILQKAFSTGPDYGRSFDWEGYTVHDAANVFRRFINLMPEHVIPLEY 145

Query: 186 YDDF 197
           Y+ F
Sbjct: 146 YERF 149



 Score = 28.7 bits (61), Expect = 0.91
 Identities = 23/67 (34%), Positives = 33/67 (49%)
 Frame = +2

Query: 254 IKKLPKPNFDLVERLIFHLARVALQEEHNRMGPNALAIVFAPCILRTHKVQPAQDSLHDI 433
           I +LP PN  L+  L+  L+  A+    N M  + LA +F P IL +H         + I
Sbjct: 171 IDELPIPNRQLLLYLLDLLSVFAMNSSKNLMTADNLAAIFQPGIL-SHPDHEVYSKDYQI 229

Query: 434 ARQTACL 454
           + QTA L
Sbjct: 230 S-QTALL 235


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 478  HLVDEDGLEAGGLARDVVQRVLR 410
            H  DE+G++AGG+ R+ +Q + R
Sbjct: 2903 HFRDEEGVDAGGVTREWLQVLAR 2925


>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 1   STLKDFTEKADSVRRCASCGACW 69
           +T  DFTEK  S    +SCG C+
Sbjct: 226 TTEVDFTEKLKSKNAVSSCGNCY 248


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 477 ILSTRMASRQAVWRAMSCSE-SCAGCTLCVRRMHG 376
           ++  ++ S   + +A +CS  +C GC LC+  + G
Sbjct: 38  LIKIKIYSLLQICKAENCSAVACRGCNLCILAVQG 72


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 636 HTYQRSANSHQSH 674
           H Y +SANSH SH
Sbjct: 154 HVYPKSANSHDSH 166


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +2

Query: 206 CSDIRSPGASFVNIYNIKKLPKPNFDLVERLIFHLARVALQEE 334
           C D+ + G     +Y +K  P+  FD  ++     A +  Q+E
Sbjct: 457 CKDLWANGIKAEFLYKVKPKPRQQFDAADKFDVPFAVILGQDE 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.128    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,068,457
Number of Sequences: 5004
Number of extensions: 33071
Number of successful extensions: 138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)