Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021785
(737 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0413 + 17854787-17854847,17855362-17855606,17856127-178561... 38 0.008
03_02_0114 + 5704002-5704037,5704547-5704666,5705040-5705076,570... 37 0.015
01_07_0307 + 42647006-42647202,42647287-42647866 33 0.31
07_03_0854 + 22029025-22030269 31 1.3
07_03_0032 - 12651989-12652636,12652726-12652956,12653515-126536... 30 1.7
08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877... 30 2.2
11_04_0365 - 16818468-16818514,16818619-16821706,16822860-168229... 29 2.9
03_02_1002 + 13124398-13124994,13125116-13125346,13125993-131262... 29 2.9
02_05_0579 + 30114127-30114177,30114691-30115386,30115883-301160... 29 2.9
12_02_0615 + 21242819-21243201,21244510-21244630,21244728-212448... 29 3.9
06_01_0374 + 2694546-2694755,2696339-2696932,2697910-2698188 29 5.1
11_01_0332 + 2483743-2484131,2486062-2486182,2486307-2486426,248... 28 6.7
09_06_0131 - 21037698-21038210,21038293-21038532,21038679-210387... 28 6.7
08_02_0606 - 19259590-19260417 28 6.7
02_01_0582 + 4315336-4315956,4316060-4316188,4316282-4316581 28 6.7
04_04_0657 + 27000894-27001094,27001188-27001544,27002387-27002581 28 8.9
>07_03_0413 +
17854787-17854847,17855362-17855606,17856127-17856189,
17856276-17856294,17856547-17856645,17856725-17856802,
17856891-17857135,17857796-17857952,17858161-17858303
Length = 369
Score = 37.9 bits (84), Expect = 0.008
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +2
Query: 212 DIRSPGASFVNIYNI-KKLPKPNFDLVERLIFHLARVALQEEHNRMGPNALAIVFAPCIL 388
++R S ++ NI KKLP N+ +E + L RV+ + N+M +LA+ FAP I+
Sbjct: 226 ELRDARVSIADLRNILKKLPNVNYMTLEFVTALLLRVSRKSSLNKMDSRSLAVEFAPLIM 285
Score = 31.5 bits (68), Expect = 0.72
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 126 ASVLKSFFRELPEPLLTFDLYDD 194
A+++K + +PEPL TF LYD+
Sbjct: 204 AALIKCYLASIPEPLTTFSLYDE 226
>03_02_0114 +
5704002-5704037,5704547-5704666,5705040-5705076,
5705905-5705981,5706642-5706755,5706902-5706969,
5707051-5707129,5707367-5707511,5707627-5707731,
5707917-5707994,5708192-5708247,5708533-5708651,
5708853-5709096,5709203-5709385,5709956-5710264,
5710350-5710399,5711042-5711102,5711184-5711267,
5711461-5711577,5711665-5711831,5711938-5712010,
5712497-5712581,5712693-5712886,5713073-5713228
Length = 918
Score = 37.1 bits (82), Expect = 0.015
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +2
Query: 245 IYNIKKLPKPNFDLVERLIFHLARVALQEEHNRMGPNALAIVFAPCILR 391
IY + P+PN L++R++ + V + NRM P+ALA AP +LR
Sbjct: 331 IYEV--FPEPNQQLLQRILKMMQIVGSHKAVNRMSPSALAACMAPLLLR 377
>01_07_0307 + 42647006-42647202,42647287-42647866
Length = 258
Score = 32.7 bits (71), Expect = 0.31
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +2
Query: 260 KLPKPNFDLVERLIFHLARVALQEEHNRMGPNALAIVFAPCILRTHKVQP 409
+LP L++ + +A VA +E N+MG +A+VFAP + TH + P
Sbjct: 181 RLPAAKAALLDWAVQLMADVAREERSNKMGSRNVAMVFAPNM--THAMDP 228
>07_03_0854 + 22029025-22030269
Length = 414
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 523 PSPASQVLQHAADGSHLVDEDGLEAGGLAR 434
PSP S V++ DG L+D DG E G R
Sbjct: 108 PSPLSWVVRDVLDGRFLLDRDGGEGGAALR 137
>07_03_0032 -
12651989-12652636,12652726-12652956,12653515-12653634,
12653768-12653891,12654023-12654366
Length = 488
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 102 DSYAVHVRASVLKSFFRELPEPLL 173
D VH AS++K++FRELPE +L
Sbjct: 184 DDIDVHCLASLIKAWFRELPEGVL 207
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 254 IKKLPKPNFDLVERLIFHLARVALQEEHNRMGPNALAIVFAP 379
++ LP L+ ++ +A V +EE N+M +A+VFAP
Sbjct: 228 VRLLPPTQAALLNWVVEFMADVVEEEESNKMNARNVAMVFAP 269
>08_02_1402 -
26786011-26786128,26786263-26786516,26787505-26787732,
26788920-26789759
Length = 479
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 435 AMSCSESCAG-CTLCVRRMHGANTIAKAFGPILLCSSCSA 319
A+ C A C C R +H AN +++ LC++C+A
Sbjct: 27 ALHCRADAARLCVACDRHVHAANALSRKHVRAPLCAACAA 66
>11_04_0365 -
16818468-16818514,16818619-16821706,16822860-16822919,
16823595-16823954
Length = 1184
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 457 LEAGGLARDVVQRVLRGLHLVRAQDA 380
+ AGG RD+ RV GLH +R Q A
Sbjct: 914 IPAGGTLRDLEIRVCNGLHTIRTQPA 939
>03_02_1002 +
13124398-13124994,13125116-13125346,13125993-13126282,
13126405-13126498
Length = 403
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 405 CTLCVRRMHGANTIAKAFGPILLCSSCSA 319
C C R +HGAN + LC++C+A
Sbjct: 58 CLPCDRHVHGANGVCSRHARAPLCAACAA 86
>02_05_0579 +
30114127-30114177,30114691-30115386,30115883-30116083,
30116354-30116658,30116944-30117073
Length = 460
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 423 SESCAGCTLCVRRMHGANTIAKAFGPILLCSSC 325
S++ + C C R +H AN +++ LLC C
Sbjct: 72 SDAASLCLSCDRNVHSANALSRRHTRTLLCDRC 104
>12_02_0615 +
21242819-21243201,21244510-21244630,21244728-21244847,
21245015-21245245,21245365-21245862
Length = 450
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +3
Query: 114 VHVRASVLKSFFRELPEPLL 173
VH AS++K++FRELPE +L
Sbjct: 200 VHCLASLIKAWFRELPEGVL 219
>06_01_0374 + 2694546-2694755,2696339-2696932,2697910-2698188
Length = 360
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 438 RAMSCSESCAGCTLCVRRMHGANTIA 361
R + C++ A CT C +H AN +A
Sbjct: 14 RVLCCADEAALCTACDEEVHAANKLA 39
>11_01_0332 +
2483743-2484131,2486062-2486182,2486307-2486426,
2486897-2487127,2487205-2487783
Length = 479
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 257 KKLPKPNFDLVERLIFHLARVALQEEHNRMGPNALAIVFAP 379
K LP L+E + +A V +E+ N+M +A+VFAP
Sbjct: 243 KCLPPAEAALLEWAVNLMADVVQEEQINKMNARNIAMVFAP 283
>09_06_0131 -
21037698-21038210,21038293-21038532,21038679-21038789,
21038872-21038926,21039074-21039210,21039284-21039421,
21040304-21040494,21040625-21040703
Length = 487
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 535 PCAPPSPASQVLQHAADGSHLVDEDGLEAGGLARDVVQRVLRGLHLVRA 389
P A P PA+ LQH + + ++ EAG L ++ V+R+ R + L A
Sbjct: 14 PAAAPPPAASTLQHLKEIASVI-----EAGSLTKE-VRRISRAVRLTVA 56
>08_02_0606 - 19259590-19260417
Length = 275
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 16 FTEKADSVRRCASCGACWTSGRRRAW--RSWTH 108
F + ++ RRCA CG G RR W RS+++
Sbjct: 145 FELRKEASRRCAECGEMRCGGGRRFWFYRSYSY 177
>02_01_0582 + 4315336-4315956,4316060-4316188,4316282-4316581
Length = 349
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 483 PSAACCRTCDAGDGGAHG 536
P+A CRTCD GDGG G
Sbjct: 25 PAAVHCRTCD-GDGGGGG 41
>04_04_0657 + 27000894-27001094,27001188-27001544,27002387-27002581
Length = 250
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 426 CSESCAGCTLCVRRMHGANTIA 361
C++ A C C RR+H AN +A
Sbjct: 18 CADEAALCDACDRRVHSANKLA 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.128 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,259,975
Number of Sequences: 37544
Number of extensions: 276494
Number of successful extensions: 1156
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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