Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021785
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.18 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.2  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   6.9  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   6.9  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           22   6.9  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   6.9  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   6.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 176 LRSLRRLHP-GCSDIRSPGASFVNIYNIKKLPKPNFDLV 289
           L SL  LH  GC  +R P  +F  +  +KKL    F+ V
Sbjct: 91  LTSLHELHVHGCKVLRIPEGAFQPLLELKKLTVQTFNSV 129


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +1

Query: 481 NHPRRAAGPA-TLETAAHTASNRLSTLRSTSAP 576
           +HP     PA T+ T   T +   +T  +T+ P
Sbjct: 646 SHPHEPGAPATTITTITTTTTTTTTTTTTTTTP 678


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/17 (64%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = -1

Query: 236 NSLLGI-GYLSSQDEVV 189
           N  LGI G+LS++DEVV
Sbjct: 157 NYRLGILGFLSTEDEVV 173


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 238 RQYLQYKETAETEFR 282
           R+Y +Y+ET++  FR
Sbjct: 287 REYRKYRETSKERFR 301


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/17 (64%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = -1

Query: 236 NSLLGI-GYLSSQDEVV 189
           N  LGI G+LS++DEVV
Sbjct: 28  NYRLGILGFLSTEDEVV 44


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/33 (27%), Positives = 13/33 (39%)
 Frame = -3

Query: 432 MSCSESCAGCTLCVRRMHGANTIAKAFGPILLC 334
           + C +SC  C   +        +  A GP  LC
Sbjct: 37  LGCGDSCHKCKYGIAMSSACGIVQCAKGPDELC 69


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/17 (64%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = -1

Query: 236 NSLLGI-GYLSSQDEVV 189
           N  LGI G+LS++DEVV
Sbjct: 157 NYRLGILGFLSTEDEVV 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.128    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,943
Number of Sequences: 438
Number of extensions: 2592
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)