Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021785
(737 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-contain... 38 0.005
At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-contain... 38 0.005
At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-contain... 38 0.009
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein... 32 0.46
At3g02380.1 68416.m00223 zinc finger protein CONSTANS-LIKE 2 (CO... 32 0.46
At3g07650.2 68416.m00917 zinc finger (B-box type) family protein... 31 0.60
At3g07650.1 68416.m00916 zinc finger (B-box type) family protein... 31 0.60
At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-contain... 30 1.4
At2g44840.1 68415.m05583 ethylene-responsive element-binding pro... 30 1.8
At5g61530.2 68418.m07721 small G protein family protein / RhoGAP... 29 3.2
At5g61530.1 68418.m07720 small G protein family protein / RhoGAP... 29 3.2
At4g27310.1 68417.m03918 zinc finger (B-box type) family protein... 29 3.2
At5g54470.1 68418.m06783 zinc finger (B-box type) family protein... 29 4.3
At3g11490.1 68416.m01401 rac GTPase activating protein, putative... 29 4.3
At1g59870.1 68414.m06745 ABC transporter family protein similar ... 29 4.3
At4g03100.1 68417.m00418 rac GTPase activating protein, putative... 28 5.6
At3g21890.1 68416.m02760 zinc finger (B-box type) family protein... 28 5.6
At4g27340.1 68417.m03923 Met-10+ like family protein ; contains... 28 7.4
At2g01750.1 68415.m00104 expressed protein 28 7.4
At5g22400.1 68418.m02613 rac GTPase activating protein, putative... 27 9.8
At5g15850.1 68418.m01854 zinc finger protein CONSTANS-LIKE 1 (CO... 27 9.8
At2g05940.1 68415.m00645 protein kinase, putative similar to aux... 27 9.8
At1g15210.1 68414.m01818 ABC transporter family protein Similar ... 27 9.8
At1g09720.1 68414.m01091 kinase interacting family protein simil... 27 9.8
>At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-containing
protein / RhoGAP domain-containing protein weak
similarity to rho-GTPase activating protein [Homo
sapiens] GI:14245732; contains Pfam profiles PF00169: PH
domain, PF00620: RhoGAP domain
Length = 870
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 266 PKPNFDLVERLIFHLARVALQEEHNRMGPNALAIVFAPCILR 391
P+PN L++R++ + ++ NRM PNA+A AP +LR
Sbjct: 278 PEPNRRLLQRILKMMHTISSHSHENRMNPNAVAACMAPLLLR 319
>At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-containing
protein / RhoGAP domain-containing protein weak
similarity to rho-GTPase activating protein [Homo
sapiens] GI:14245732; contains Pfam profiles PF00169: PH
domain, PF00620: RhoGAP domain
Length = 822
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 266 PKPNFDLVERLIFHLARVALQEEHNRMGPNALAIVFAPCILR 391
P+PN L++R++ + ++ NRM PNA+A AP +LR
Sbjct: 278 PEPNRRLLQRILKMMHTISSHSHENRMNPNAVAACMAPLLLR 319
>At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-containing
protein-related / RhoGAP domain-containing protein
contains Pfam domain, PF00620: RhoGAP domain
Length = 902
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 257 KKLPKPNFDLVERLIFHLARVALQEEHNRMGPNALAIVFAPCILR 391
+ P+PN L++R++ + VA + NRM NA+A AP +LR
Sbjct: 320 ESFPEPNRRLLQRILMMMQTVASNKTVNRMNTNAVAACMAPLLLR 364
>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
contains similarity to CONSTANS homologs
Length = 373
Score = 31.9 bits (69), Expect = 0.46
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 423 SESCAGCTLCVRRMHGANTIAKAFGPILLCSSCSA 319
S++ C C R +H AN ++K L+C C+A
Sbjct: 19 SDAACLCLSCDRNVHSANALSKRHSRTLVCERCNA 53
>At3g02380.1 68416.m00223 zinc finger protein CONSTANS-LIKE 2 (COL2)
identical to putative flowering-time gene CONSTANS
(COL2) GB:AAB67879 GI:1507699 SP:Q96502 (Arabidopsis
thaliana)
Length = 347
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 423 SESCAGCTLCVRRMHGANTIAKAFGPILLCSSCSATLA 310
++S CT C R+H AN +A + +C SC + A
Sbjct: 30 ADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPA 67
>At3g07650.2 68416.m00917 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 31.5 bits (68), Expect = 0.60
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 423 SESCAGCTLCVRRMHGANTIAKAFGPILLCSSCSA 319
S++ C C R +H AN ++K L+C C+A
Sbjct: 19 SDAACLCLSCDRSVHSANALSKRHSRTLVCERCNA 53
>At3g07650.1 68416.m00916 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 31.5 bits (68), Expect = 0.60
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 423 SESCAGCTLCVRRMHGANTIAKAFGPILLCSSCSA 319
S++ C C R +H AN ++K L+C C+A
Sbjct: 19 SDAACLCLSCDRSVHSANALSKRHSRTLVCERCNA 53
>At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-containing
protein / RhoGAP domain-containing protein weak
similarity to glucocorticoid receptor DNA binding factor
1 [Canis familiaris] GI:23266717; contains Pfam profiles
PF00169: PH domain, PF00620: RhoGAP domain
Length = 827
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 254 IKKLPKPNFDLVERLIFHLARVALQEEHNRMGPNALAIVFAPCILR 391
I+ P+PN L+ R++ + + NRM +A+A +P +LR
Sbjct: 279 IETFPEPNRRLLLRMLKMMHTITSHSSENRMTSSAVAACMSPLLLR 324
>At2g44840.1 68415.m05583 ethylene-responsive element-binding
protein, putative
Length = 226
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -2
Query: 544 GWTPCAPP--SPASQVLQHA--ADGSHLVDEDGLEAGGLAR 434
GWTP PP SPA + A A GSH + G++ G+ R
Sbjct: 57 GWTPSVPPVTSPAEENKPPATKASGSHAPRQKGMQYRGVRR 97
>At5g61530.2 68418.m07721 small G protein family protein / RhoGAP
family protein contains Pfam domain, PF00620: RhoGAP
domain
Length = 367
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 126 ASVLKSFFRELPEPLLTFDLYDD 194
A++LK + LP PL TF+LY++
Sbjct: 210 AALLKYYLASLPTPLTTFELYNE 232
>At5g61530.1 68418.m07720 small G protein family protein / RhoGAP
family protein contains Pfam domain, PF00620: RhoGAP
domain
Length = 376
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 126 ASVLKSFFRELPEPLLTFDLYDD 194
A++LK + LP PL TF+LY++
Sbjct: 210 AALLKYYLASLPTPLTTFELYNE 232
>At4g27310.1 68417.m03918 zinc finger (B-box type) family protein
zinc-finger protein S3574, Oryza sativa, PIR3:JE0113
Length = 223
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 432 MSC-SESCAGCTLCVRRMHGANTIAKAFGPILLCSSCSA 319
M C S+ + C C ++HGAN + LLCS+C +
Sbjct: 14 MYCESDQASLCWDCDGKVHGANFLVAKHTRCLLCSACQS 52
>At5g54470.1 68418.m06783 zinc finger (B-box type) family protein
similar to unknown protein (pir||T05755)
Length = 215
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 432 MSC-SESCAGCTLCVRRMHGANTIAKAFGPILLCSSCSA 319
M C S+ + C C ++HGAN + LLCS+C +
Sbjct: 15 MYCESDQASLCWDCDGKVHGANFLVAKHMRCLLCSACQS 53
>At3g11490.1 68416.m01401 rac GTPase activating protein, putative
similar to rac GTPase activating protein 1 GB:AAC62624
GI:3695059 [Lotus japonicus]; contains Pfam profile
PF00620: RhoGAP domain
Length = 435
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 102 DSYAVHVRASVLKSFFRELPEPLL 173
D+ VH AS++K++FRELP +L
Sbjct: 200 DNIDVHCLASLIKAWFRELPSGVL 223
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 254 IKKLPKPNFDLVERLIFHLARVALQEEHNRMGPNALAIVFAP 379
++ LP L++ I +A V E+ N+M +A+VFAP
Sbjct: 244 VRLLPSTEASLLDWAINLMADVVEMEQLNKMNARNIAMVFAP 285
>At1g59870.1 68414.m06745 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1469
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 114 VHVR-ASVLKSFFRELPEPLLTFDLYDDFILAAQ 212
VH+ A+VL S + PE TFDL+DD IL ++
Sbjct: 389 VHLNEATVLMSLLQPAPE---TFDLFDDIILVSE 419
>At4g03100.1 68417.m00418 rac GTPase activating protein, putative
similar to rac GTPase activating protein 3 [Lotus
japonicus] GI:3695063; contains Pfam profile PF00620:
RhoGAP domain
Length = 430
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 254 IKKLPKPNFDLVERLIFHLARVALQEEHNRMGPNALAIVFAPCILRTHKVQPAQDSLHDI 433
IK+L L+ + +A V +EE N+M +A+VFAP + T P +H +
Sbjct: 231 IKQLKPTESALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNM--TQMTDPLTALMHAV 288
>At3g21890.1 68416.m02760 zinc finger (B-box type) family protein
contains Pfam profile: PF01760 CONSTANS family zinc
finger
Length = 121
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 423 SESCAGCTLCVRRMHGANTIAKAFGPILLCSSCSATLAR 307
++S C C R +HGAN +A +LC+SC R
Sbjct: 44 ADSAFLCRKCDRWVHGANFLAWRHVRRVLCTSCQKLTRR 82
>At4g27340.1 68417.m03923 Met-10+ like family protein ; contains
Pfam profile PF02475: Met-10+ like-protein
Length = 619
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +2
Query: 218 RSPGASF--VNIYNIKKLPKPNFDLVERLIFHLARVAL 325
R G SF +++Y K P FD ER+ L+ VA+
Sbjct: 544 RDEGLSFPTIHVYGFSKASDPEFDFHERIRIALSEVAV 581
>At2g01750.1 68415.m00104 expressed protein
Length = 629
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 308 LARVALQEEHNRMGP--NALAIVFAPCILRTHKVQPAQDSLHDIARQTACLEAILVDKMR 481
L RV ++ + M P LA + A L H++ QD + R T EA L+D R
Sbjct: 163 LRRVHAAQKDDDMPPIEAILAPLEAELKLARHEIVKLQDDNRALDRLTKSKEAALLDAER 222
Query: 482 TIRGVL 499
T++ L
Sbjct: 223 TVQSAL 228
>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
similar to rac GTPase activating protein 1 [Lotus
japonicus] GI:3695059; contains Pfam profile PF00620:
RhoGAP domain
Length = 466
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 242 NIYNIKKLPKPNFDLVERLIFHLARVALQEEHNRMGPNALAIVFAP 379
N+ ++ LP L++ I +A V E N+M +A+VFAP
Sbjct: 264 NVELVRLLPPTEAALLDWAINLMADVVQYEHLNKMNSRNIAMVFAP 309
>At5g15850.1 68418.m01854 zinc finger protein CONSTANS-LIKE 1 (COL1)
identical to Zinc finger protein CONSTANS-LIKE 1
SP:O50055 from [Arabidopsis thaliana]
Length = 355
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -3
Query: 453 RQAVWRAMSCSESCAGCTLCVRRMHGANTIAKAFGPILLCSSC 325
R A ++S C+ C ++H AN +A + +C SC
Sbjct: 16 RSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSC 58
>At2g05940.1 68415.m00645 protein kinase, putative similar to
auxin-regulated dual specificity cytosolic kinase
[Lycopersicon esculentum] gi|14484938|gb|AAK62821
Length = 462
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 460 HPRRQDANHPRRAAGPATLETAAHTASNRLST 555
H ++Q +NHPR + P T + S R ST
Sbjct: 407 HHQQQQSNHPRSSPSPTTKSPSPTAKSPRNST 438
>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
gb|Z70524 GI:1514643 PDR5-like ABC transporter from
Spirodela polyrrhiza and is a member of the PF|00005 ABC
transporter family. ESTs gb|N97039 and gb|T43169 come
from this gene
Length = 1442
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 114 VHV-RASVLKSFFRELPEPLLTFDLYDDFILAAQ 212
VH+ A+VL S + PE TFDL+DD IL ++
Sbjct: 387 VHLTEATVLISLLQPAPE---TFDLFDDIILLSE 417
>At1g09720.1 68414.m01091 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 928
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +1
Query: 511 TLETAAHTASNRLSTLRSTSAPQRHEEHILVGHINAIEKEKAILTND 651
+LET A + + L TLRS E + L HI +EK+KA L +D
Sbjct: 350 SLETTALSHTALLKTLRS-------ETNELQDHIRDVEKDKACLVSD 389
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.128 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,425,943
Number of Sequences: 28952
Number of extensions: 189015
Number of successful extensions: 656
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -