Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021784
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 109 4e-25
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 109 4e-25
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 3.4
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 27 3.4
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 4.4
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 26 5.9
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 5.9
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 7.8
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 109 bits (262), Expect = 4e-25
Identities = 48/65 (73%), Positives = 56/65 (86%)
Frame = +1
Query: 61 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 240
M + E FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60
Query: 241 VGIDI 255
V +DI
Sbjct: 61 VALDI 65
Score = 108 bits (259), Expect = 8e-25
Identities = 45/85 (52%), Positives = 66/85 (77%)
Frame = +3
Query: 255 FNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQ 434
FNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D+++P+G+LG +
Sbjct: 66 FNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNE 124
Query: 435 LRTDFDSGKELLCTVLKSCGEECVM 509
+ F+ GK+L+ TV+ + GEE +
Sbjct: 125 IEEGFEEGKDLIITVVSAMGEEIAL 149
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 109 bits (262), Expect = 4e-25
Identities = 48/65 (73%), Positives = 56/65 (86%)
Frame = +1
Query: 61 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 240
M + E FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60
Query: 241 VGIDI 255
V +DI
Sbjct: 61 VALDI 65
Score = 109 bits (261), Expect = 5e-25
Identities = 46/93 (49%), Positives = 68/93 (73%)
Frame = +3
Query: 255 FNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQ 434
FNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D+++P+G+LG +
Sbjct: 66 FNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNE 124
Query: 435 LRTDFDSGKELLCTVLKSCGEECVMPSKQTQLS 533
+ FD G++L+ TV+ + GEE + + S
Sbjct: 125 IEEGFDEGRDLIITVVSAMGEETALACRDAPSS 157
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 297 NMDVPHVKREDYQLTDISDDGYL 365
NM +P+++ E Q+ D + D YL
Sbjct: 968 NMSIPYIRGEYVQMIDANQDNYL 990
>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 204
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 153 FRYAEGSSMQDC*NVHIQNRKARPR*SSLGWD 248
+ + E +Q C N+ +N +A R SS GWD
Sbjct: 41 YHHLEKGLLQQCFNLVKKNMEALYRQSSFGWD 72
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 396 HAGHRCQPSGSGSHHPRYQSVGSLRASRGVRP 301
H G P+ PR + GS A+RG RP
Sbjct: 957 HVGTGLPPTSKSKPFPRLATGGSTAAARGPRP 988
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +3
Query: 450 DSGKELLCTV-LKSCGEECVMPSK 518
D E CT+ SCG+ CV P++
Sbjct: 280 DQAVESFCTIKFNSCGQVCVCPNR 303
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -2
Query: 508 MTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 395
+ S+P STV N+S P++ S + +P + S +L SS
Sbjct: 1254 LNSSTPITSSTVVNSSTPITSSTALNTSIPITSSSVLNSS 1293
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 508 MTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSSRRSPLSAI 371
+ S+P STV N+S P++ S + P + S +L SS S+I
Sbjct: 3138 LNSSTPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSSI 3185
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 315 VKREDYQLTDISDDGYL 365
+KREDY+LT ++ GYL
Sbjct: 91 IKREDYELTLCANCGYL 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,187
Number of Sequences: 5004
Number of extensions: 64475
Number of successful extensions: 212
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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