Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021784
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 99 4e-21
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75) 31 1.2
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19) 30 1.5
SB_3686| Best HMM Match : Myotub-related (HMM E-Value=2.8e-08) 29 3.5
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94) 29 3.5
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35) 24 4.2
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 28 6.2
SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_24178| Best HMM Match : FARP (HMM E-Value=6.1e-31) 28 6.2
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_45329| Best HMM Match : Protamine_P2 (HMM E-Value=0.63) 28 8.1
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 28 8.1
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 98.7 bits (235), Expect = 4e-21
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +1
Query: 55 TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 234
T ++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSKTGKHGHAKV
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644
Score = 66.5 bits (155), Expect = 2e-11
Identities = 28/62 (45%), Positives = 43/62 (69%)
Frame = +3
Query: 333 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVMP 512
++T+I +DGYL LM DNGD R D+K+ D D+ ++R F++ + + TVLK+ GEE V+
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVVG 702
Query: 513 SK 518
K
Sbjct: 703 VK 704
>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
Length = 568
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 68 TSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVH-ARLLKCPH 202
T+K HT++P T P P N+ P + + +L ++H + PH
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLHFLYFYQAPH 213
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 20 HISFLTVVKFKTQQWVTSKTHTSRPETPGPQPPSPCNVRPC 142
H L K KT + T+K +T++P T P+ P +PC
Sbjct: 92 HTIKLYTTKPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132
>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +2
Query: 56 QQWVTSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKP 211
+Q V S P P P PP+PC + PC +T +VVH+ L P P
Sbjct: 126 EQHVVSHVMHPAPPPPPPPPPAPC-MPPCHQT-----QVVHSVQLHASPPGP 171
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -2
Query: 532 ESC--VCFDGMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPS 413
+SC +CF S P + H+N+ P S NC P PS
Sbjct: 1285 QSCPKICFTSCKPSCPVHCCSEHSNACPQECSTDNCKPSCPS 1326
>SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)
Length = 975
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -3
Query: 453 CRS-QYATVCRGHHPEF*GPHAGHRCQPSGSGSHHPRYQSV-GSLRASRGVRPC 298
CRS Q TV HH HRC+ SG+H R+ ++ L RPC
Sbjct: 241 CRSLQVQTVINAHHTVRNVCDICHRCRKGCSGNHDNRFGAIQARLLGGLAPRPC 294
>SB_3686| Best HMM Match : Myotub-related (HMM E-Value=2.8e-08)
Length = 629
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +3
Query: 240 GWD*YFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 419
GWD + N + +C ST + + HV +Y+ + L N +ED K+ +
Sbjct: 204 GWDMFSNDLDFAKVCSSTQSWRISHV-NINYESVLMRSGEPLCGSMSNKRCKEDEKLVNS 262
Query: 420 DLGT 431
LG+
Sbjct: 263 ALGS 266
>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
Length = 1058
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 35 TVVKFKTQQWVTSKTHTSRPETPGPQPPSPCNVRP 139
+VV + VT K T +P TP P P P RP
Sbjct: 758 SVVAMPAARPVTPKPVTPKPVTPKPVTPKPVTTRP 792
>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
Length = 458
Score = 23.8 bits (49), Expect(2) = 4.2
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 101 PGPQPPSPCNVRP 139
PGPQ P P N+ P
Sbjct: 362 PGPQDPGPGNILP 374
Score = 23.4 bits (48), Expect(2) = 4.2
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +2
Query: 119 SPCNVRPCVKTVSLC*RVVHARLLKCPHPKPESTATLKFTWLG 247
+PC ++ C + +S+ V ++K P P TL ++G
Sbjct: 398 NPCRIQYCTQEISMTPIHVLLLIVKAPILDPSLVVTLCSRFIG 440
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +3
Query: 258 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNG 386
NG Y CP N D + EDY + D YLT D G
Sbjct: 400 NGHTYHMTCPGQTNFDPAKKRCEDYDCSG-RDVAYLTDQNDGG 441
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/82 (23%), Positives = 33/82 (40%)
Frame = +3
Query: 285 PSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKE 464
P + + V + +++ D + ADN + RE+ + +L ++ T G
Sbjct: 284 PESDGIRVDETENGEHEAVDELPEDKPDTEADNYEQREETPTKEDELKSECTTSDSEGTP 343
Query: 465 LLCTVLKSCGEECVMPSKQTQL 530
T KS GEE V + L
Sbjct: 344 SAATYGKSDGEENVAQESEESL 365
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -2
Query: 493 PQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIRVR 362
P+ S V + +LP+ V C+P SPS I RS P VR
Sbjct: 253 PRQISNVRSLTLPVRYQVIGCLP-SPSDIKRSVPYPPRQISNVR 295
>SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +3
Query: 300 MDVPHVKREDYQLTDISDDGYLT----LMADNGDLREDLKIPDGDLGTQLRTDFDSGKEL 467
+D+P+ K + + L ++DD L+ + D L E L PD + R D G E
Sbjct: 37 LDIPYEKYDKFDLESLTDDECLSEFRFIKNDLYRLNEALNFPD-QITCPNRLTVD-GMEA 94
Query: 468 LCTVLKSCGEECVMPSKQTQLS 533
LC L+ C Q+S
Sbjct: 95 LCMTLRRFAYPCRYEDLVPQIS 116
>SB_24178| Best HMM Match : FARP (HMM E-Value=6.1e-31)
Length = 721
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Frame = +1
Query: 373 WLTTVTCVRTSKFRMVTSAHS----CVLTSTAARNCCAPC*NPAVRSASCRQSKHSSRQI 540
W VT + VTS H C+ + R C N +R C S H R+I
Sbjct: 164 WKICVTSNHKIRKICVTSDHKIRKICITSDHKIRKICVTS-NHKIRKI-CVTSSHKFRKI 221
Query: 541 NQLSIYRVNKLLIFYNQQLLHKCKT 615
S +++ K+ + N ++ C T
Sbjct: 222 CVTSDHKIRKICVTSNHKIWKICVT 246
>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 145 KNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVG 246
+ G +M +G+PCKI + K G HG +H+ G
Sbjct: 17 RRGVMMAEGKPCKITGTIEGLKAGNHGF-HIHVYG 50
>SB_45329| Best HMM Match : Protamine_P2 (HMM E-Value=0.63)
Length = 474
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 169 GRPCKIVEMSTSKTGKHGHAKVHLVGIDISMVKSMKISVPPHTTWTYPT 315
G+ + M S + G+ K LV IS ++++ +++PPHT PT
Sbjct: 421 GQKTRPGRMKKSTSLDSGNVK-RLVDESISAIETVNVALPPHTLKPQPT 468
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 71 SKTHTSRPETPGPQPPSPCNV 133
++T T++PET P+PP+P +
Sbjct: 165 TETTTTKPETKPPKPPAPSTI 185
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,420,894
Number of Sequences: 59808
Number of extensions: 536317
Number of successful extensions: 1571
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1560
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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