BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV021784 (686 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical pr... 116 1e-26 Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical p... 106 1e-23 CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical ... 31 0.77 AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 30 1.3 AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear recep... 30 1.3 AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 30 1.3 AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 30 1.3 AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 2.4 Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical pr... 28 7.2 U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical pr... 28 7.2 Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical pr... 27 9.5 Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr... 27 9.5 AC006830-5|AAK68612.2| 569|Caenorhabditis elegans Hypothetical ... 27 9.5 >Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical protein F54C9.1 protein. Length = 161 Score = 116 bits (280), Expect = 1e-26 Identities = 53/72 (73%), Positives = 59/72 (81%) Frame = +1 Query: 73 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 252 +D HF TGDSGA+ATFP QCSALRKN VM+KGRPCKIVEMSTSKTGKHGHAKVH+V ID Sbjct: 7 DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66 Query: 253 ISMVKSMKISVP 288 I K ++ P Sbjct: 67 IFTSKKLEDICP 78 Score = 84.6 bits (200), Expect = 6e-17 Identities = 42/87 (48%), Positives = 60/87 (68%), Gaps = 2/87 (2%) Frame = +3 Query: 255 FNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGT 431 F KK EDICPSTHNMDVP VKR +Y L I DDGY +LM ++ + ++DLK+PD +LG Sbjct: 68 FTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELGQ 126 Query: 432 QLRTDFDSGK-ELLCTVLKSCGEECVM 509 Q+R ++ + +L V+ + GEE ++ Sbjct: 127 QIRDAYEKDEGSVLVQVVSAIGEEAIL 153 >Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical protein T05G5.10 protein. Length = 195 Score = 106 bits (255), Expect = 1e-23 Identities = 47/72 (65%), Positives = 58/72 (80%) Frame = +1 Query: 73 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 252 ++ F++ +SGA+ATFP QCSALRKN VM++GRPCKIVEMSTSKTGKHGHAKVH+V ID Sbjct: 41 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100 Query: 253 ISMVKSMKISVP 288 I K ++ P Sbjct: 101 IFTTKKLEDICP 112 Score = 87.0 bits (206), Expect = 1e-17 Identities = 43/90 (47%), Positives = 62/90 (68%), Gaps = 2/90 (2%) Frame = +3 Query: 255 FNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGT 431 F KK EDICPSTHNMDVP VKR +Y L I +DG+ +LM ++ +L++DLK+P+GDLG Sbjct: 102 FTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLGN 160 Query: 432 QLRTDFDSGK-ELLCTVLKSCGEECVMPSK 518 +R + + +L V+ +CGEE ++ K Sbjct: 161 TIREALEKDEGSVLVQVVAACGEEAILGYK 190 >CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical protein K09E10.2 protein. Length = 695 Score = 31.1 bits (67), Expect = 0.77 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Frame = +3 Query: 297 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD-FDSGKEL 467 N +P +K++ Y L ++ GY+ + GDL+ KI D LR D ++ G+ Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKA-MLRPDGYERGRLR 629 Query: 468 LCTVLKSCGEEC 503 ++K CG++C Sbjct: 630 HAALVKECGDKC 641 >AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor NHR-80 protein. Length = 486 Score = 30.3 bits (65), Expect = 1.3 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Frame = +2 Query: 38 VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 154 V+K T + ++S T T+ TPGP P +PC+ P V T+ Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192 >AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear receptor NHR-80 protein. Length = 350 Score = 30.3 bits (65), Expect = 1.3 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Frame = +2 Query: 38 VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 154 V+K T + ++S T T+ TPGP P +PC+ P V T+ Sbjct: 13 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 56 >AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone receptor familyprotein 80, isoform b protein. Length = 504 Score = 30.3 bits (65), Expect = 1.3 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Frame = +2 Query: 38 VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 154 V+K T + ++S T T+ TPGP P +PC+ P V T+ Sbjct: 167 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 210 >AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone receptor familyprotein 80, isoform a protein. Length = 486 Score = 30.3 bits (65), Expect = 1.3 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Frame = +2 Query: 38 VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 154 V+K T + ++S T T+ TPGP P +PC+ P V T+ Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192 >AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical protein F59E12.1 protein. Length = 811 Score = 29.5 bits (63), Expect = 2.4 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +2 Query: 68 TSKTHTSRPETPGPQPPSPCNVRP 139 T K T R E+P P PP P RP Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381 >Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical protein R11A8.8 protein. Length = 293 Score = 27.9 bits (59), Expect = 7.2 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = +3 Query: 357 GYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLC 473 GYL GD ++++K+ +G Q+ +D D K C Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289 >U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical protein F09F9.4 protein. Length = 654 Score = 27.9 bits (59), Expect = 7.2 Identities = 10/31 (32%), Positives = 19/31 (61%) Frame = -1 Query: 155 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 63 +P +R+++C G + E E ++KC +M P Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375 >Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical protein F32D8.2 protein. Length = 568 Score = 27.5 bits (58), Expect = 9.5 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 7/52 (13%) Frame = +3 Query: 273 EDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 407 ED+ T + H+ R + ++ D+S DGYLTL + N DL D++ Sbjct: 81 EDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132 >Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical protein C38D4.3 protein. Length = 1784 Score = 27.5 bits (58), Expect = 9.5 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 6/85 (7%) Frame = -1 Query: 476 GAQQFLAAVEVSTQLCAEVTIRNFEVLTQVTVVSHQGQVAIIRDISQLVVFALH---VGY 306 GA+ F+ A+ V A + EV +++TVV A + D +Q V L+ + + Sbjct: 94 GAEHFVLALAVDPDSPAMTITHSLEVPSKITVVKTLFSSADMADETQRTVLKLYHRLMTW 153 Query: 305 VHVV---CGGTDIFILFTIEISIPT 240 H+V C T ++ + + P+ Sbjct: 154 QHIVAIGCKETQCYLARLVAVETPS 178 >AC006830-5|AAK68612.2| 569|Caenorhabditis elegans Hypothetical protein ZK105.5 protein. Length = 569 Score = 27.5 bits (58), Expect = 9.5 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 4/82 (4%) Frame = +1 Query: 379 TTVTCVRTSKFRMVTS----AHSCVLTSTAARNCCAPC*NPAVRSASCRQSKHSSRQINQ 546 T TC RT + + S V T T+ +C P A S CRQS + + Sbjct: 137 TKYTCTRTIIDHITLNYDIYMESIVATPTSETSCKDPY--YAFESCRCRQSYDITENLVN 194 Query: 547 LSIYRVNKLLIFYNQQLLHKCK 612 + K+ I+ ++++++CK Sbjct: 195 KYKWADKKMSIYKQEEVMNQCK 216 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,057,152 Number of Sequences: 27780 Number of extensions: 391204 Number of successful extensions: 1198 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1091 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1194 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1571291122 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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