Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021784
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...   116   1e-26
Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...   106   1e-23
CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical ...    31   0.77 
AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    30   1.3  
AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear recep...    30   1.3  
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    30   1.3  
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    30   1.3  
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    29   2.4  
Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AC006830-5|AAK68612.2|  569|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score =  116 bits (280), Expect = 1e-26
 Identities = 53/72 (73%), Positives = 59/72 (81%)
 Frame = +1

Query: 73  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 252
           +D HF TGDSGA+ATFP QCSALRKN  VM+KGRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7   DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66

Query: 253 ISMVKSMKISVP 288
           I   K ++   P
Sbjct: 67  IFTSKKLEDICP 78



 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 42/87 (48%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
 Frame = +3

Query: 255 FNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGT 431
           F  KK EDICPSTHNMDVP VKR +Y L  I DDGY +LM  ++ + ++DLK+PD +LG 
Sbjct: 68  FTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELGQ 126

Query: 432 QLRTDFDSGK-ELLCTVLKSCGEECVM 509
           Q+R  ++  +  +L  V+ + GEE ++
Sbjct: 127 QIRDAYEKDEGSVLVQVVSAIGEEAIL 153


>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score =  106 bits (255), Expect = 1e-23
 Identities = 47/72 (65%), Positives = 58/72 (80%)
 Frame = +1

Query: 73  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 252
           ++  F++ +SGA+ATFP QCSALRKN  VM++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41  DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100

Query: 253 ISMVKSMKISVP 288
           I   K ++   P
Sbjct: 101 IFTTKKLEDICP 112



 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 43/90 (47%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
 Frame = +3

Query: 255 FNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGT 431
           F  KK EDICPSTHNMDVP VKR +Y L  I +DG+ +LM  ++ +L++DLK+P+GDLG 
Sbjct: 102 FTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLGN 160

Query: 432 QLRTDFDSGK-ELLCTVLKSCGEECVMPSK 518
            +R   +  +  +L  V+ +CGEE ++  K
Sbjct: 161 TIREALEKDEGSVLVQVVAACGEEAILGYK 190


>CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical
           protein K09E10.2 protein.
          Length = 695

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +3

Query: 297 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD-FDSGKEL 467
           N  +P +K++ Y L     ++ GY+  +   GDL+   KI D      LR D ++ G+  
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKA-MLRPDGYERGRLR 629

Query: 468 LCTVLKSCGEEC 503
              ++K CG++C
Sbjct: 630 HAALVKECGDKC 641


>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +2

Query: 38  VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 154
           V+K  T + ++S T      T+   TPGP P +PC+  P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 350

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +2

Query: 38  VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 154
           V+K  T + ++S T      T+   TPGP P +PC+  P V T+
Sbjct: 13  VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 56


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +2

Query: 38  VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 154
           V+K  T + ++S T      T+   TPGP P +PC+  P V T+
Sbjct: 167 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 210


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +2

Query: 38  VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 154
           V+K  T + ++S T      T+   TPGP P +PC+  P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 68  TSKTHTSRPETPGPQPPSPCNVRP 139
           T K  T R E+P P PP P   RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381


>Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical
           protein R11A8.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 357 GYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLC 473
           GYL      GD ++++K+ +G    Q+ +D D  K   C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 155 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 63
           +P  +R+++C G + E  E  ++KC  +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375


>Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical
           protein F32D8.2 protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
 Frame = +3

Query: 273 EDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 407
           ED+   T +    H+ R + ++       D+S DGYLTL + N  DL  D++
Sbjct: 81  EDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132


>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical
           protein C38D4.3 protein.
          Length = 1784

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
 Frame = -1

Query: 476 GAQQFLAAVEVSTQLCAEVTIRNFEVLTQVTVVSHQGQVAIIRDISQLVVFALH---VGY 306
           GA+ F+ A+ V     A     + EV +++TVV      A + D +Q  V  L+   + +
Sbjct: 94  GAEHFVLALAVDPDSPAMTITHSLEVPSKITVVKTLFSSADMADETQRTVLKLYHRLMTW 153

Query: 305 VHVV---CGGTDIFILFTIEISIPT 240
            H+V   C  T  ++   + +  P+
Sbjct: 154 QHIVAIGCKETQCYLARLVAVETPS 178


>AC006830-5|AAK68612.2|  569|Caenorhabditis elegans Hypothetical
           protein ZK105.5 protein.
          Length = 569

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
 Frame = +1

Query: 379 TTVTCVRTSKFRMVTS----AHSCVLTSTAARNCCAPC*NPAVRSASCRQSKHSSRQINQ 546
           T  TC RT    +  +      S V T T+  +C  P    A  S  CRQS   +  +  
Sbjct: 137 TKYTCTRTIIDHITLNYDIYMESIVATPTSETSCKDPY--YAFESCRCRQSYDITENLVN 194

Query: 547 LSIYRVNKLLIFYNQQLLHKCK 612
              +   K+ I+  ++++++CK
Sbjct: 195 KYKWADKKMSIYKQEEVMNQCK 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,057,152
Number of Sequences: 27780
Number of extensions: 391204
Number of successful extensions: 1198
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)