Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021784
(686 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein ... 25 0.68
AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein ... 25 0.68
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 24 1.6
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 2.1
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 22 4.8
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.3
>DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein 2
protein.
Length = 117
Score = 25.0 bits (52), Expect = 0.68
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 149 FLRRAEHCMGKVAEAPESPVSKCVSSMSPIVV 54
+LRR C + EAP PV + + S++P+V+
Sbjct: 47 YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76
>AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein
protein.
Length = 117
Score = 25.0 bits (52), Expect = 0.68
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 149 FLRRAEHCMGKVAEAPESPVSKCVSSMSPIVV 54
+LRR C + EAP PV + + S++P+V+
Sbjct: 47 YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 23.8 bits (49), Expect = 1.6
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +1
Query: 487 PAVRSAS--CRQSKHSSRQINQLSIYRVNK 570
P+V SAS C++ K ++ ++ +IY+ NK
Sbjct: 571 PSVMSASSTCKKDKKNAGSGSRFTIYKANK 600
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.4 bits (48), Expect = 2.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 11 PVGHISFLTVVKFKTQQWVTSKTHTSRPETPGPQ 112
P+ H S+ ++ T H PETPGPQ
Sbjct: 447 PLAHSSYPAAIQIGH----TPHHHPHPPETPGPQ 476
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 22.2 bits (45), Expect = 4.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 215 FPVLDVDISTILHGR 171
FPVL V I+ +LHG+
Sbjct: 8 FPVLFVIINVLLHGQ 22
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 466 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 368
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 466 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 368
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 466 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 368
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 466 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 368
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 466 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 368
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 466 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 368
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 466 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 368
N L + +R N PSG +RS+ +P+S R
Sbjct: 412 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 466 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 368
N L + +R N PSG +RS+ +P+S R
Sbjct: 412 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,082
Number of Sequences: 438
Number of extensions: 5326
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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