Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021783
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    27   3.4  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    26   4.5  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    26   4.5  
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy...    25   7.8  

>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 391 RADVHRADQLSKRTNHSRRLRTTFSHARQ 477
           R   H+ ++  + TNHSRR R   S  R+
Sbjct: 9   RTSTHKFNETDRETNHSRRHRHHHSRHRE 37


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 435 PLTSASYHLQSRTPTITVFLIRWDT*FG 518
           P +S +YH +   P  T++  +W+  FG
Sbjct: 329 PTSSIAYHEEEINPDNTIYRAKWEEYFG 356


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +1

Query: 175 QSIVTRLFS---LCARACFINKFRQVTKFLWFIFLVKCALYGLQFWD 306
           Q I+ +L++   + A+   INK   +   + ++F V   +YGL FW+
Sbjct: 298 QDILAKLYNKYLITAQRFGINKAIAMGLMVGWMFFVAYGVYGLAFWE 344


>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 336 DWSPSRFAKKIPKLQSVQSALHQ 268
           +W+P  F K +PK    +S +H+
Sbjct: 59  EWNPEAFYKNVPKSMLKRSIIHR 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,819
Number of Sequences: 5004
Number of extensions: 47562
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)