Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021783
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0630 - 24600242-24600839,24600948-24601077,24601659-24601800     29   2.6  
04_04_0460 - 25378860-25379409,25379515-25379644,25380733-25380898     29   4.6  
02_02_0081 - 6608901-6609680,6610380-6610808,6610893-6610994,661...    29   4.6  
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568...    29   4.6  
01_06_1651 + 38909410-38909625,38909713-38910181,38910265-38910899     29   4.6  
09_06_0024 - 20304877-20305589,20307495-20307588                       28   6.1  

>02_04_0630 - 24600242-24600839,24600948-24601077,24601659-24601800
          Length = 289

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -3

Query: 329 VLRGLPKKSQN--CNPYKAHFTKNMNHKNLVTCRNLFIKHARAHNENSRV 186
           + R LP ++ N   N ++ HF K    KN+   R  F+K  R   + S++
Sbjct: 95  IARSLPGRTDNEIKNYWRTHFKKGKPSKNIERARARFLKQRREMQQQSQL 144


>04_04_0460 - 25378860-25379409,25379515-25379644,25380733-25380898
          Length = 281

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -3

Query: 329 VLRGLPKKSQN--CNPYKAHFTKNMNHKNLVTCRNLFIKHARAHNENSRVTIDCLR-RKT 159
           + R LP ++ N   N ++ HF K    KN+   R  F+K  R   ++ ++    L    T
Sbjct: 103 IARSLPGRTDNEIKNYWRTHFKKGKPSKNIERARARFLKQRREMQQSQQLQQPTLMPTPT 162

Query: 158 PQ 153
           PQ
Sbjct: 163 PQ 164


>02_02_0081 -
           6608901-6609680,6610380-6610808,6610893-6610994,
           6611114-6611429,6611624-6611806,6611909-6612030,
           6612181-6612251,6612732-6612921
          Length = 730

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 206 HNENSRVTIDCLRRKTPQKLRGTERHSVNIMTSTGQRFCYLKP 78
           HN  S+++   L R  PQ     E      MTST   FCY+ P
Sbjct: 560 HNFVSKISDVGLARLVPQSAAAAEATQYR-MTSTAGTFCYIDP 601


>01_06_1801 -
           39954425-39954533,39955289-39955578,39955786-39956838,
           39956998-39957263,39957345-39957420,39957525-39957605,
           39957676-39957831,39958565-39958669,39958761-39959367,
           39959514-39959585,39959802-39959953,39960063-39960240,
           39960642-39960745,39960822-39960953,39961036-39961132,
           39961280-39961407,39961533-39961592,39962799-39962918,
           39963011-39963091,39963173-39963361,39963826-39964024,
           39964177-39964257,39964398-39964588,39965226-39965382,
           39965986-39966119,39966266-39966334,39966434-39966481,
           39966572-39966646,39967112-39967192,39967399-39967461,
           39967564-39967623,39967754-39967795,39968777-39968902,
           39969027-39969176
          Length = 1843

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 401 YIELTNCRSEPTTHVGFVPPSVTHANNYGILNSVGYVI 514
           Y+E  +    PTT+V  +PP     N Y I   V ++I
Sbjct: 823 YVEFLSTAVTPTTYVQLIPPLEDLINKYHIEPDVAFLI 860


>01_06_1651 + 38909410-38909625,38909713-38910181,38910265-38910899
          Length = 439

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 593 GRPGLLLLSPLAESGPGDTCSAVVGPESRIPPN*EYRNCWRA 468
           G   LLL+S    S   D+C+A +     IP N    NC++A
Sbjct: 22  GSSSLLLVSSQTSSSSSDSCTAALAVGDLIPFNTTGLNCFQA 63


>09_06_0024 - 20304877-20305589,20307495-20307588
          Length = 268

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -3

Query: 671 FVLPLRAIVLRCFDC-LRPPMLRRFGAGRPGLLLLSPLAESGPGDTCSAVVGPESRI 504
           F LP   +VL C DC LR   L  F  G P  + L+ L     G TC+      S +
Sbjct: 77  FQLPDSGVVLTCLDCFLRNGSLYCFEYGVPSAVFLAKLR----GGTCTIAQSDPSEV 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,584,139
Number of Sequences: 37544
Number of extensions: 341523
Number of successful extensions: 811
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)