Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021783
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ...    31   1.0  
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical...    31   1.0  
L16621-5|AAA28230.1|  214|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z30662-10|CAI58651.1|  409|Caenorhabditis elegans Hypothetical p...    28   7.2  
Z30662-9|CAA83138.2|  451|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc...    27   9.6  

>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
           protein Y57A10A.1 protein.
          Length = 1342

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = -3

Query: 314 PKKSQNCNPYKAHFTKNMNHKNLVTCRNLFIKHARAHNENSRVTIDCLRRKTPQKLRGTE 135
           PKKS        +  +N+  K++ T     I      +  +R+ +D +  KTPQKL   E
Sbjct: 438 PKKSVKAEKNAQNLAENLQ-KSVKTVPVTQISSKTTVSARNRLDLDKIPSKTPQKLVKVE 496

Query: 134 RHSVNIMTSTG 102
           ++S +   S+G
Sbjct: 497 KNSSDAPNSSG 507


>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
           protein Y57A10A.1 protein.
          Length = 1342

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = -3

Query: 314 PKKSQNCNPYKAHFTKNMNHKNLVTCRNLFIKHARAHNENSRVTIDCLRRKTPQKLRGTE 135
           PKKS        +  +N+  K++ T     I      +  +R+ +D +  KTPQKL   E
Sbjct: 438 PKKSVKAEKNAQNLAENLQ-KSVKTVPVTQISSKTTVSARNRLDLDKIPSKTPQKLVKVE 496

Query: 134 RHSVNIMTSTG 102
           ++S +   S+G
Sbjct: 497 KNSSDAPNSSG 507


>L16621-5|AAA28230.1|  214|Caenorhabditis elegans Hypothetical
           protein ZK688.3 protein.
          Length = 214

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 26  LVDPPGCRNWHEARSLTPVLDNKTFVQSKS 115
           +V PPGC+N H+   L  V+  K    SKS
Sbjct: 53  IVAPPGCQNLHQEVELGVVISKKASRISKS 82


>Z30662-10|CAI58651.1|  409|Caenorhabditis elegans Hypothetical
           protein T16H12.5b protein.
          Length = 409

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 159 GFPTQTVNCHAAVFIVRTRVF 221
           G PTQT + H A+   R+RVF
Sbjct: 234 GSPTQTFHIHKAILAARSRVF 254


>Z30662-9|CAA83138.2|  451|Caenorhabditis elegans Hypothetical
           protein T16H12.5a protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 159 GFPTQTVNCHAAVFIVRTRVF 221
           G PTQT + H A+   R+RVF
Sbjct: 276 GSPTQTFHIHKAILAARSRVF 296


>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase
           associated protein homologprotein 1, isoform a protein.
          Length = 1256

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
 Frame = -3

Query: 194 SRVTIDCLRRKTPQKLRG--TERHSVNIMT----STGQRFCYLKPVSVIVPRANSCSPGD 33
           S V      R  P  + G  + RH+ N  T    S  +R     PV++I P  N   P D
Sbjct: 629 SPVESKVFNRSGPTVINGFTSNRHTYNSHTDDFDSRNRRDSSQPPVAIIEPNINVHMPSD 688

Query: 32  PLVLERP 12
           P+   +P
Sbjct: 689 PMPYNKP 695


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,653,281
Number of Sequences: 27780
Number of extensions: 288646
Number of successful extensions: 671
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)