Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021783
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50600.1 68414.m05683 scarecrow-like transcription factor 5 (...    31   0.95 
At4g36830.1 68417.m05223 GNS1/SUR4 membrane family protein weak ...    29   2.2  
At4g27890.1 68417.m04003 nuclear movement family protein contain...    29   3.8  
At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR...    28   5.1  
At1g05960.1 68414.m00625 expressed protein similar to hypothetic...    28   5.1  

>At1g50600.1 68414.m05683 scarecrow-like transcription factor 5
           (SCL5) similar to SCARECROW GB:AAB06318 GI:1497987 from
           [Arabidopsis thaliana]
          Length = 597

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -3

Query: 299 NCNPYKAHFTKNMNHKNLVTCRNLFIKHARAHNENSRVTIDCLRRKTPQKL--RGTER 132
           N  P+   F + MNH  L    ++ +K AR H E   V   CL R+    +   G ER
Sbjct: 473 NTAPFLPRFVETMNHY-LAVFESIDVKLARDHKERINVEQHCLAREVVNLIACEGVER 529


>At4g36830.1 68417.m05223 GNS1/SUR4 membrane family protein weak
           similarity to long chain polyunsaturated fatty acid
           elongation enzyme [Isochrysis galbana] GI:17226123;
           contains Pfam profile PF01151: GNS1/SUR4 family
          Length = 289

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = +1

Query: 112 VIIFTLCLSVPRSF*GVFRRRQSIVTRLF--SLCARACFI-NKFRQVTKFLWFIF--LVK 276
           V   T  L + R+   V R R+  V++LF  S+ A   F+  +F Q  + L  +   LV 
Sbjct: 135 VFYLTRFLHMFRTIFAVLRSRRLAVSQLFCNSVMAFTSFLWLEFSQSYQILAILSTTLVY 194

Query: 277 CALYGLQFWDFFGKP 321
             +YG +FW  FG P
Sbjct: 195 SVVYGYRFWTGFGLP 209


>At4g27890.1 68417.m04003 nuclear movement family protein contains
           Pfam profile: PF03593 nuclear movement protein
          Length = 293

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = -3

Query: 227 FIKHARAHNENSRVTIDCLRRKTPQKLRGTERHSVNIMTSTGQRFCYLKPVSVIVPRANS 48
           F+K   A  E     +   +R    + +  E+ SV  M     +   LKP  +  P+  S
Sbjct: 43  FLKKDTAEKEIVAAVMAAKQRLREAEKKKLEKESVKSMEVEKPKKDSLKPTELEKPKEES 102

Query: 47  CSPGDPLVLERP 12
               DP+ +E+P
Sbjct: 103 LMATDPMEIEKP 114


>At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1059

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +2

Query: 290 DCSFGIFLANLEGLQSGVPXXXXXXXXXXQLRNFEQTYIELTNCRSEPTTHVGFVPPSVT 469
           D    +F+ N++ L    P           L+N  Q   E+TN +    TH+G VP  + 
Sbjct: 279 DFGLSVFMDNIKELMHTRPVGSDDYSAKLHLQN--QLMSEITNHKETKITHLGVVPDRLK 336

Query: 470 HANNYGILNSV 502
                 +L+S+
Sbjct: 337 DNKVLIVLDSI 347


>At1g05960.1 68414.m00625 expressed protein similar to hypothetical
           protein GB:AAF80120 GI:8810459 from [Arabidopsis
           thaliana ]
          Length = 982

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 365 WSPSCG--SGPLTGVLRGLPKKSQNCNPYKAHFTKNMNHKNLVTCRNLFI 222
           WSP  G  S  L  +   L +  +NC+   +   K+++HKN++  + L I
Sbjct: 302 WSPQKGVASSVLLFLQSRLEESGENCHVLVSSLIKHLDHKNVIKQQGLQI 351


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,671,058
Number of Sequences: 28952
Number of extensions: 260929
Number of successful extensions: 646
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)