Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021781
         (654 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4A837 Cluster: Putative uncharacterized protein; n=5; ...    35   2.0  
UniRef50_A6GB87 Cluster: Putative uncharacterized protein; n=1; ...    35   2.0  
UniRef50_Q0I2Z6 Cluster: Lipooligosaccharide biosynthesis protei...    34   2.6  
UniRef50_A0C0Y4 Cluster: Chromosome undetermined scaffold_140, w...    34   3.4  
UniRef50_Q5CKL6 Cluster: Ethanolaminephosphotransferase; n=2; Cr...    33   6.0  
UniRef50_Q388P3 Cluster: Putative uncharacterized protein; n=1; ...    33   7.9  
UniRef50_P79826 Cluster: Myelin proteolipid protein; n=9; Clupeo...    33   7.9  

>UniRef50_Q4A837 Cluster: Putative uncharacterized protein; n=5;
           Mycoplasma hyopneumoniae|Rep: Putative uncharacterized
           protein - Mycoplasma hyopneumoniae (strain 7448)
          Length = 295

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 253 PIKFFEIINIGCFVTKF-YLIIFNFHHFDDFYIRHLYKLTF 372
           P+ FF II I  F  KF +LI FN   FD+++ RH  +  F
Sbjct: 63  PLPFFLIILILIFTLKFDFLIHFNAKIFDNYFFRHFIEAIF 103


>UniRef50_A6GB87 Cluster: Putative uncharacterized protein; n=1;
           Plesiocystis pacifica SIR-1|Rep: Putative
           uncharacterized protein - Plesiocystis pacifica SIR-1
          Length = 749

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 520 LSIIFIC-CSIVECAASPSLLLTGNEFTTVVRGHQQRQKHNKAAAY 654
           L+++ +C C++++    PS  LT +E   +VRGH    KH    +Y
Sbjct: 38  LAVLIVCVCALIQWTGEPSRSLTADEPLHLVRGHVYLWKHTARLSY 83


>UniRef50_Q0I2Z6 Cluster: Lipooligosaccharide biosynthesis protein;
           n=1; Haemophilus somnus 129PT|Rep: Lipooligosaccharide
           biosynthesis protein - Haemophilus somnus (strain 129Pt)
           (Histophilus somni (strain 129Pt))
          Length = 158

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
 Frame = -1

Query: 633 FLALLMSTDDCRKLVSRQ--QQRRRCSTFND*ATNENNT*IWTHYVPSQYVTDIRSAKKH 460
           ++  L S  D R+ + ++  QQ    + F+    NE N  I  HYVPS   TD+ + +K 
Sbjct: 4   YVISLKSAVDRRQHIEKEFSQQHIPYTFFDAFQLNEENKHILQHYVPSLNKTDLTTGEKG 63

Query: 459 -------GTPFKVNEMAYNDFIDIKQLPVPRLNKSV 373
                     F ++E+ +N  ++ K+  + +LN ++
Sbjct: 64  CFMSLTVENTFPIDEIIFNQILNHKKYKIYQLNPAI 99


>UniRef50_A0C0Y4 Cluster: Chromosome undetermined scaffold_140,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_140,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 173

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = -1

Query: 516 WTHYVP-SQYVTDIRSAKKHGTPFKVNEMAYNDFIDIKQ----LPVPRLNKSVE 370
           W+ Y+P  Q  TD     K    ++  E +Y D+I++K     +PVPRL K VE
Sbjct: 49  WSEYIPVEQRYTDYVPETK--VEYRPVEKSYTDYIEVKHETDYVPVPRLEKRVE 100


>UniRef50_Q5CKL6 Cluster: Ethanolaminephosphotransferase; n=2;
           Cryptosporidium|Rep: Ethanolaminephosphotransferase -
           Cryptosporidium hominis
          Length = 428

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 21/82 (25%), Positives = 39/82 (47%)
 Frame = +1

Query: 268 EIINIGCFVTKFYLIIFNFHHFDDFYIRHLYKLTFNAFVQSRNGQLFDVNEIVISHFVYF 447
           EI  + C +T F  +  + + +  F I  ++ LT ++ + +      +V+   +    Y 
Sbjct: 262 EICGVLCHLT-FQFLFLSSNTYKKFPIMTMFILTTSSSIVALR---MNVSSFTLEELPYV 317

Query: 448 EWCAMFFCTSDVGYVLGRHIMG 513
            W A+ F TS V  + GR+I G
Sbjct: 318 HWPALPFYTSSVFLLFGRNIFG 339


>UniRef50_Q388P3 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 1046

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 88  SSKLCQSRNCKSWVSNQHLEGFSRHSSFF 174
           S + C +   K+W  N   EG+SRHSSFF
Sbjct: 595 SEEACLNELYKAWECNSSGEGWSRHSSFF 623


>UniRef50_P79826 Cluster: Myelin proteolipid protein; n=9;
           Clupeocephala|Rep: Myelin proteolipid protein -
           Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri)
          Length = 258

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 18/74 (24%), Positives = 35/74 (47%)
 Frame = +1

Query: 256 IKFFEIINIGCFVTKFYLIIFNFHHFDDFYIRHLYKLTFNAFVQSRNGQLFDVNEIVISH 435
           IK+F+ +  G  +  F+ +       + FY     K TF  F  +R G+   +  I++++
Sbjct: 77  IKYFQYVIYG--LASFFFLYCILLLAEGFYTTSAVKQTFGEFRSTRCGRCLSLTFIIVTY 134

Query: 436 FVYFEWCAMFFCTS 477
            +   W A+F  T+
Sbjct: 135 VLAVIWLAVFAFTA 148


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,369,855
Number of Sequences: 1657284
Number of extensions: 10521899
Number of successful extensions: 26396
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26389
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)