Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021781
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    27   3.1  
SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.2  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   9.5  
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    25   9.5  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   9.5  
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma...    25   9.5  

>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 358 YKLTFNAFVQSRNGQLFDVNEIVISHFVYFEWCAMFFCTSD--VGYVLGRHI 507
           Y     AF++S N  L  VN         + WC  FFCT+   VGY    H+
Sbjct: 230 YGFRDEAFMKSTNYDLGKVNN-------GWSWCLTFFCTARILVGYDAAGHV 274


>SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -3

Query: 520 NLDPLCAFPVRNRHQKCKKTW-HTIQS 443
           N DP+CAF      +   KTW H I+S
Sbjct: 44  NTDPVCAFDNSTVVELSDKTWDHVIES 70


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 106  SRNCKSWVSNQHLEGFSRHSSFFRINL 186
            SR C  W+SN HL+  +     +  NL
Sbjct: 2269 SRCCTMWLSNSHLDELNNSLQHYLQNL 2295


>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 605 TVVNSFPVNNNEGDAAHSTIEQQMKIILKSGPIMCLPST 489
           T ++ F     + +   + +E Q+KI+L+S     LP T
Sbjct: 105 TEIDKFSFETAKSNILQNNMESQIKIVLRSKQDCLLPDT 143


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 510 HYVPSQYVTDIRSAKKHGTP-FKVNEMAYNDFI 415
           H   S+YVT +R A + G P F V E + N  I
Sbjct: 833 HSQMSRYVTKVRQALEQGEPLFAVVEKSKNPII 865


>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 520 LSIIFICCS-IVECAASPSLLLTGNEFTTV 606
           L +IF+CCS + + +    LL   NE TTV
Sbjct: 37  LFLIFLCCSCLTKSSIFARLLRVKNETTTV 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,205
Number of Sequences: 5004
Number of extensions: 47758
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)