Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021781
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0116 - 20950649-20951281                                         29   3.2  
06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558...    29   4.3  
01_06_0402 - 29044205-29044540,29044626-29044898,29044982-29045416     29   4.3  
01_06_0127 - 26718452-26718989,26719082-26720211                       28   7.5  
01_01_0319 - 2574583-2574675,2575853-2576055,2576140-2576364,257...    27   9.9  

>09_06_0116 - 20950649-20951281
          Length = 210

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 558 CCISFVVVDGKRVYDSRPWTSATPETQQ 641
           CC++  VVD        P TS  PETQQ
Sbjct: 135 CCMALAVVDDGADQTLPPTTSTAPETQQ 162


>06_01_0747 -
           5587261-5587356,5587472-5587855,5588133-5588192,
           5588428-5588484,5588663-5588800,5588901-5588966,
           5589234-5589452,5589522-5589737,5589813-5589884,
           5589952-5590205,5590356-5590525,5590840-5591029,
           5592211-5592331,5592838-5592921,5593003-5593365,
           5594530-5594724,5594938-5595933,5596329-5596370
          Length = 1240

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 516 WTHYVPSQYVTDIRSAKKHG 457
           W H + +Q++ D+R AKK G
Sbjct: 743 WDHIIANQFLRDLREAKKRG 762


>01_06_0402 - 29044205-29044540,29044626-29044898,29044982-29045416
          Length = 347

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/81 (24%), Positives = 38/81 (46%)
 Frame = +1

Query: 190 FGYTNVAILQSSGSLHWLF*IPIKFFEIINIGCFVTKFYLIIFNFHHFDDFYIRHLYKLT 369
           F   +V  + S  SLHWL  +P    + +N      K Y+   +       Y+R  ++  
Sbjct: 126 FPAKSVHFVCSCSSLHWLSQVPSGLLDEMNRPINKGKMYISSTSPLAVPVAYLRQ-FQRD 184

Query: 370 FNAFVQSRNGQLFDVNEIVIS 432
           F+ F++SR  ++F    +V++
Sbjct: 185 FSLFLKSRAAEVFSGGRMVLA 205


>01_06_0127 - 26718452-26718989,26719082-26720211
          Length = 555

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 382 VQSRNGQLFDVNEIVISHFVYFEWCAMFFCTSDVGYVLGRHIMGPD 519
           + S   Q++ +  IVI+   +F      FC S V  +LGR    PD
Sbjct: 16  LDSARTQMYHMKAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYQPD 61


>01_01_0319 -
           2574583-2574675,2575853-2576055,2576140-2576364,
           2576590-2576603,2577146-2577210
          Length = 199

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 223 RTEELQHLYNQKLDLS-ERKKSDVRSL 146
           +T+EL+H  NQKL L  E K  D+ SL
Sbjct: 126 KTKELEHEENQKLRLQLELKNKDIESL 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,971,511
Number of Sequences: 37544
Number of extensions: 272236
Number of successful extensions: 596
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)