Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021781
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22347| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)                  28   7.6  

>SB_22347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 193 QKLDLSERKKSDVRSLLDAGLIPNFYNSYFDR 98
           + LDLS   K  +RSLL+   +  F NSY  R
Sbjct: 173 ENLDLSSAYKDSLRSLLNPHNLALFINSYITR 204


>SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)
          Length = 925

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 394 NGQLFDVNEIVISHFVYFEWCAMFFCTSD 480
           NG +F+V+++  S++ Y+E    F+ T D
Sbjct: 686 NGNIFNVSQLTDSYYRYYEALMAFWLTQD 714


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,985,882
Number of Sequences: 59808
Number of extensions: 330778
Number of successful extensions: 1069
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)