Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021781
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast...    31   0.54 
Z46828-6|CAA86855.1| 1249|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81495-4|CAB04058.1|  171|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF303268-1|AAG50226.1|  171|Caenorhabditis elegans 2O123 protein.      29   2.9  
Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical p...    29   3.8  
U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromos...    29   3.8  
AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical ...    29   3.8  
U64844-12|AAB18312.4|  417|Caenorhabditis elegans Hypothetical p...    28   6.7  
Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF100307-7|AAC68934.1|  353|Caenorhabditis elegans Hypothetical ...    27   8.8  

>U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 4, isoform a protein.
          Length = 796

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 523 LNLDPLCAFPVRNRHQKCKKTWHTIQSKRNGL 428
           L LD +  +P +  +Q C+  WH I++  NGL
Sbjct: 20  LELDDINFYPCKCEYQICRFCWHRIRTDENGL 51


>Z46828-6|CAA86855.1| 1249|Caenorhabditis elegans Hypothetical protein
            R03D7.1 protein.
          Length = 1249

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/63 (22%), Positives = 32/63 (50%)
 Frame = -3

Query: 616  VHGRLS*TRFPSTTTKEMQHIQRLSNK*K*YLNLDPLCAFPVRNRHQKCKKTWHTIQSKR 437
            +H  +  T +  +T +++     LS K   Y  + P C +P +  H + +  W  +++++
Sbjct: 1126 LHKEVRTTLWGYSTNEDLTESDLLSIK---YQGIRPACGYPSQPDHTEKRTLWKLLEAEK 1182

Query: 436  NGL 428
            NG+
Sbjct: 1183 NGI 1185


>Z81495-4|CAB04058.1|  171|Caenorhabditis elegans Hypothetical
           protein F08G2.4 protein.
          Length = 171

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 490 RNRHQKCKKTWHTIQSKRNGL*RFH 416
           +N  +K K TW+ ++ K+NG+  FH
Sbjct: 147 KNFEKKEKPTWNDVEKKKNGVFEFH 171


>AF303268-1|AAG50226.1|  171|Caenorhabditis elegans 2O123 protein.
          Length = 171

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 490 RNRHQKCKKTWHTIQSKRNGL*RFH 416
           +N  +K K TW+ ++ K+NG+  FH
Sbjct: 147 KNFEKKEKPTWNDVEKKKNGVFEFH 171


>Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical
           protein M106.1 protein.
          Length = 1244

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 256 SGSKRASARNQRTE-ELQHLYNQKLDLSERKKSDVRS 149
           SG   A  R +R   +++HL  +K  LS R KSD+ S
Sbjct: 413 SGITAAKKRGERLHNQIKHLEGEKATLSARSKSDIGS 449


>Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical
           protein M106.1 protein.
          Length = 1244

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 256 SGSKRASARNQRTE-ELQHLYNQKLDLSERKKSDVRS 149
           SG   A  R +R   +++HL  +K  LS R KSD+ S
Sbjct: 413 SGITAAKKRGERLHNQIKHLEGEKATLSARSKSDIGS 449


>U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromosome
           and X-chromosomeassociated MIX-1 protein protein.
          Length = 1244

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 256 SGSKRASARNQRTE-ELQHLYNQKLDLSERKKSDVRS 149
           SG   A  R +R   +++HL  +K  LS R KSD+ S
Sbjct: 413 SGITAAKKRGERLHNQIKHLEGEKATLSARSKSDIGS 449


>AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical
           protein M106.1 protein.
          Length = 1244

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 256 SGSKRASARNQRTE-ELQHLYNQKLDLSERKKSDVRS 149
           SG   A  R +R   +++HL  +K  LS R KSD+ S
Sbjct: 413 SGITAAKKRGERLHNQIKHLEGEKATLSARSKSDIGS 449


>U64844-12|AAB18312.4|  417|Caenorhabditis elegans Hypothetical
           protein T22F3.10 protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
 Frame = +1

Query: 250 IPIKFFEIINIGCFVTKFYLIIFNFHHFDDFYIRHLYKLTFNAFVQSRNGQLFDVNEIVI 429
           +PI F E++  G   T FY+ +  F +    ++  ++   F    +     +F+   +  
Sbjct: 233 MPIYFHEVLKFGITETGFYVALVLFSYMPIRFVAAIFSDKFRFISEKLKIMIFNTFAVGF 292

Query: 430 SHFVYFEWCAMFFCTSDVGYVLGRH-IMGPDLSIIFICC 543
           S F        F C   +G++   H ++     I+ +CC
Sbjct: 293 SGF-------FFAC---IGFIPAEHNMLSLSFFILTMCC 321


>Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical
           protein B0491.1 protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 268 EIINIGCFVTKFYLII-FNFHHFDD 339
           +II +G F+ +  LI+ F F H+DD
Sbjct: 285 QIIGLGAFIPQIVLIVFFAFKHYDD 309


>AF100307-7|AAC68934.1|  353|Caenorhabditis elegans Hypothetical
           protein T12B5.10 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 268 EIINIGCFVTKFYLIIFNFHHFDDFYIRHLYKLTFNAFVQSRNGQL 405
           E++ IG  +    ++I +F HF  F I H+ +    A +Q R+  L
Sbjct: 242 EVVKIGSKIAS--IMIVHFFHFKCFTINHIDEFPAQAAIQMRDDLL 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,610,857
Number of Sequences: 27780
Number of extensions: 270305
Number of successful extensions: 706
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)