Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021781
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22040.1 68416.m02780 receptor-like protein kinase-related co...    29   2.0  
At2g40560.1 68415.m05004 protein kinase family protein contains ...    28   4.7  

>At3g22040.1 68416.m02780 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function that is usually associated with protein kinase
           domain Pfam:PF00069; similar to receptor-like protein
           kinase 5 (GI:13506747){Arabidopsis thaliana}
          Length = 257

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 459 HVFLHF*CRLRTGKAHNGSRFKYYFHLL 542
           +V+LH  CR+  GK H GSR++  F  L
Sbjct: 33  NVYLHHKCRVGQGKYHPGSRYEKDFDSL 60


>At2g40560.1 68415.m05004 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 303

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 268 EIINIGCFVTKFYLIIFNFHHFDDFYIRHL 357
           +I ++GC V + +  I    +FD+FY+ HL
Sbjct: 211 DIYSLGCVVNEMFGAIPIQEYFDEFYVWHL 240


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,502,841
Number of Sequences: 28952
Number of extensions: 236022
Number of successful extensions: 593
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)