Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021780
         (714 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6EI23 Cluster: Two-component signal transduction histi...    36   0.75 
UniRef50_A3J549 Cluster: CHU large protein; n=1; Flavobacteria b...    35   2.3  
UniRef50_Q5DFY7 Cluster: SJCHGC00725 protein; n=1; Schistosoma j...    34   4.0  

>UniRef50_A6EI23 Cluster: Two-component signal transduction histidine
            kinase; n=1; Pedobacter sp. BAL39|Rep: Two-component
            signal transduction histidine kinase - Pedobacter sp.
            BAL39
          Length = 929

 Score = 36.3 bits (80), Expect = 0.75
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 11/123 (8%)
 Frame = +1

Query: 64   YSTQLL*AFTNLYVH*QLKEINFRMIYSQVN-----------QSLIHKKQYKMESNLVIY 210
            Y  ++    T  YV  Q+KE+  + I SQ+N           QSLI+  QYK E+N  IY
Sbjct: 712  YKVRIANIRTKEYVKRQIKELEIKAIRSQMNPHFMFNALNSIQSLINNHQYK-EAN--IY 768

Query: 211  IGNISIEDFPCFRHTTVMPIQLD*IFEELLL*THIK*QINFQ*IFNLRNLKAMNTDVITI 390
            +   S+       ++    + L    E + L   ++ ++ F  +FN+     +NTD+I I
Sbjct: 769  LEKFSLLMRRVLNNSEQTFVSLSDEIEAVTLYAELE-KLRFDFVFNITLDDDLNTDLIEI 827

Query: 391  PNL 399
            P +
Sbjct: 828  PGM 830


>UniRef50_A3J549 Cluster: CHU large protein; n=1; Flavobacteria
           bacterium BAL38|Rep: CHU large protein - Flavobacteria
           bacterium BAL38
          Length = 873

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 343 FNLRNLKAMNTDVITIPNLKETFAVHIFSRSYSLLINVQSN--FTTKIYVTSYK 498
           F + NL        T+ N++ T ++ I +    L+   QSN  FTTKIY+ +YK
Sbjct: 820 FEINNLLGQVVHQGTLENIQNTVSLPILNEGIYLVTIKQSNKQFTTKIYINNYK 873


>UniRef50_Q5DFY7 Cluster: SJCHGC00725 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC00725 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 468

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 355 NLKAMNTDVITIPNLKETFAVHIFSRSYSLLINVQSNFTTKIYVT 489
           N+   N +      L    ++ +F  SY +LIN+++NFTT  YVT
Sbjct: 80  NVTLTNVNYCVENLLNNNHSLCLFEFSYDILINIENNFTTLPYVT 124


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 582,483,071
Number of Sequences: 1657284
Number of extensions: 10823053
Number of successful extensions: 21353
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21339
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)