Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021780
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    31   0.12 
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    29   0.87 
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    28   1.5  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    27   3.5  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    27   3.5  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    26   4.7  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   4.7  
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    25   8.1  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    25   8.1  

>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +1

Query: 91  TNLYVH*QLKEINFRMIYSQVNQSLIHKKQYKMESNLVIYIGNISIEDFPCF---RHTTV 261
           + L +H   K+I F  + S    + ++   YK+ES +     ++S+E+F CF   R T+ 
Sbjct: 347 STLPIHLACKKIPFYDVTSHHYTTPLNPNGYKLESFIFDLFPSVSVENFGCFQVPRRTSF 406

Query: 262 MPIQ 273
            P++
Sbjct: 407 SPLK 410


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +2

Query: 11  FFLSQIFNTILLYYSFIHTVHNYCRHSPIFMFIDN*RKLTLE 136
           FF   I N+I   Y +I    N C    IF+F    + LTLE
Sbjct: 420 FFTPFITNSIGFKYGYIFAACNLCAACIIFLFAHETKGLTLE 461


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 11  FFLSQIFNTILLYYSFIHTVHNYCRHSPIFMFIDN*RKLTLE 136
           FF   I N+I   Y ++    N C    IF+F    + LTLE
Sbjct: 422 FFTPFISNSIGFKYGYVFAACNLCAAIIIFLFAKETKGLTLE 463


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 11  FFLSQIFNTILLYYSFIHTVHNYCRHSPIFMFIDN*RKLTLE 136
           FF   I ++I   Y +I    N C    IF+F    + LTLE
Sbjct: 420 FFTPFISDSIGFKYGYIFAACNLCAACIIFLFAHETKGLTLE 461


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/58 (22%), Positives = 25/58 (43%)
 Frame = -2

Query: 338 YWKLICYLMCVYXXXXXXXXXNCIGITVVCLKQGKSSIDIFPM*MTRLLSILYCFLWI 165
           +W L+C L  ++           + +TV+ L +    I I    + R + I+   LW+
Sbjct: 115 FWCLVCTLALIFLTYFYETWVKAVKVTVISLAKCVKVISIGLFNIRREMMIIIWILWL 172


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 11  FFLSQIFNTILLYYSFIHTVHNYCRHSPIFMFIDN*RKLTLE 136
           FF   I N+I   Y +I    N C     F+F    + LTLE
Sbjct: 420 FFTPFITNSIGFKYGYIFASCNLCASIVTFLFAHESKGLTLE 461


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 160 SLIHKKQYKMESNLVIYIGNISIEDFPCFRHTTVMPIQLD 279
           S IH K Y   S   I +  IS+++  C  + ++  IQL+
Sbjct: 326 SAIHTKDYVRPSQNDISVSQISVDEKICTSYESLPKIQLE 365


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 391 PNLKETFAVHIFSRSYSLLINVQS 462
           PN     A H+F+R Y L IN  S
Sbjct: 22  PNALRPVAFHVFTRKYDLNINRDS 45


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +2

Query: 2   FFFFFLSQIFNTILLYYSFIHTVHNYCRHSPIFMFIDN*RKLTLE*FTH 148
           +FF FL ++F +   +Y  +  +  +    P F FI+    +  E  TH
Sbjct: 231 WFFEFLLKVFRSNRSFYMLMRDIKFFPGVPPFFTFINLLNNVAKEKLTH 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,197
Number of Sequences: 5004
Number of extensions: 53399
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)