Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021780
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13019| Best HMM Match : F5_F8_type_C (HMM E-Value=7.4e-23)          32   0.40 
SB_54782| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  

>SB_13019| Best HMM Match : F5_F8_type_C (HMM E-Value=7.4e-23)
          Length = 498

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 379 VITIPNLKETFAVHIFSRSYSLLINVQSNFTTKIYVTSYKITTMK 513
           V  + ++ + F V++  R Y   +  Q  F+T  YVTSYK+   K
Sbjct: 352 VSAVNDVNQFFQVNLQRRHYVTAVATQRRFSTSQYVTSYKVQHSK 396


>SB_54782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = -2

Query: 518 LCFIVVILYDVT*IFVVKLD*TLISKEYERE----NICTANVSFKFGIVITSVFMA 363
           L F VV ++ +  IF  +LD  L+ K  ++     N CT  + F+FG V+ S+ +A
Sbjct: 295 LLFYVVPMFTLYDIFENQLDIPLLRKVGDQPLKCYNGCTPKLVFRFGFVVVSMVVA 350


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,064,229
Number of Sequences: 59808
Number of extensions: 332472
Number of successful extensions: 677
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)