Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021780
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016684-1|AAB66200.1|  290|Caenorhabditis elegans Hypothetical ...    31   0.62 
Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AL032647-7|CAA21691.2|  360|Caenorhabditis elegans Hypothetical ...    28   7.6  

>AF016684-1|AAB66200.1|  290|Caenorhabditis elegans Hypothetical
           protein F45C12.11 protein.
          Length = 290

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 178 QYKMESNLVIYIGNISIEDFPCFRHTTVM 264
           +YKME+ +V++ GNI  + F  FR TT +
Sbjct: 261 RYKMENFMVLFFGNIQRKVFNFFRETTTL 289


>Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical
           protein F08A10.2 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 373 TDVITIPNLKETFAVHIFSRSYSLLINVQSNFTTKIYVTSY 495
           TD+ITIPN     ++ IFS  Y  L ++   F   +YV  Y
Sbjct: 5   TDIITIPNTVAGISLFIFSAIY--LFSLFIMFPIYVYVYRY 43


>AL032647-7|CAA21691.2|  360|Caenorhabditis elegans Hypothetical
           protein Y57A10B.4 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/83 (25%), Positives = 35/83 (42%)
 Frame = +3

Query: 414 CTYIFAFVFFAY*RSV*LHHENLRNVVQNNDDETQIFLLSIFMTRESQI**HNLRIIISF 593
           C     FVFF Y  S  +H    + + +   D  Q  L   F   E      N+R I+  
Sbjct: 202 CVLNAGFVFFGYSISWKVHARWRKQMDEPQTDGEQYSLAKKFQIEE------NIRFIVLI 255

Query: 594 KNILLILKLYLPVRWHIL*SFTF 662
           + ++L++ +YL +   +L    F
Sbjct: 256 RKMVLVIVIYLSLSLTMLICLVF 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,108,290
Number of Sequences: 27780
Number of extensions: 279168
Number of successful extensions: 521
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)