Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021779
         (756 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.0  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   4.6  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   6.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   6.1  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 607 LTNILNFAYKIYSIVYLYCTNLKNGKSLTLLN 512
           +TN+ N  Y  Y    + CT+ +N + ++++N
Sbjct: 353 VTNLTNLTYPSYYNQDVSCTHYQNPEYISVVN 384


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 237 FHLLTDDYYHLLPFC 193
           +HL  + YY++L FC
Sbjct: 322 YHLEIEKYYNILYFC 336


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 186 YVDKKGVSDNNHQLISENYQ*RYMYSAVSNACM*P 290
           Y  K G  +NNH     NY    ++   +NA M P
Sbjct: 431 YSGKVGYYENNHYNGDPNYISPEVFPNTNNAIMTP 465


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 186 YVDKKGVSDNNHQLISENYQ*RYMYSAVSNACM*P 290
           Y  K G  +NNH     NY    ++   +NA M P
Sbjct: 379 YSGKVGYYENNHYNGDPNYISPEVFPNTNNAIMTP 413


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,219
Number of Sequences: 336
Number of extensions: 3162
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)