Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021779
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   2.2  
SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       26   5.0  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    26   5.0  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   8.8  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +1

Query: 472  LEN-DEEF*VTNEENLIALNFSRSLNWYSTNIRSNIFYKQNL 594
            LEN +EE+   N+E L++LN S S +  ++ +++ +  K+NL
Sbjct: 1291 LENSNEEYKRHNQEILLSLNSSTSTSSDASRLKNELVSKENL 1332


>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 104

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 245 VTLHVQCCFKCMYVARLMK 301
           V LH++CC  C Y +++ K
Sbjct: 53  VCLHIRCCICCKYNSKIKK 71


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 704 AAFQVLVDPNLALDHGRPPMMTSDLINI 621
           A  Q LVDP LA D G  P    DL+ +
Sbjct: 375 ATCQSLVDPELADDEGANPTGLYDLVGV 402


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 328 FFFYYNCICFH*AGYIHAFET 266
           FFF+ +C  FH A +IH +++
Sbjct: 82  FFFFSHCRRFHIAIFIHPYDS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,160
Number of Sequences: 5004
Number of extensions: 50516
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)