Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021779
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0982 - 22025279-22027277,22030256-22030488,22031205-220313...    31   1.3  
06_03_0805 + 24775346-24775543,24775643-24775858,24775930-247759...    30   1.7  

>10_08_0982 -
           22025279-22027277,22030256-22030488,22031205-22031344,
           22032783-22032957
          Length = 848

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -3

Query: 607 LTNILNFAYKIYSIVYLYCTNLKNGKSLTLLNFLHLSPKILRH 479
           LT   N   K+YS+  L   ++  GK+L  L+ L   P++LRH
Sbjct: 643 LTEFANSLSKLYSLRRLIIGDVGYGKTLNFLDQLPSPPQLLRH 685


>06_03_0805 +
           24775346-24775543,24775643-24775858,24775930-24775970,
           24776510-24776551,24777019-24777055,24779796-24780092
          Length = 276

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 607 VKDYEILIKSDVIIGGRPWSSARFGSTKTWKAACRSTRTSTKFC 738
           V+ Y I     V + GRP +    G T T +  CRS   S +FC
Sbjct: 90  VQTYVINSAKIVFLNGRPQARPGKGVTNTCEICCRSLPDSFRFC 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,040,361
Number of Sequences: 37544
Number of extensions: 253548
Number of successful extensions: 444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)