Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021779
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    24   1.8  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    24   1.8  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   7.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   7.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.4  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   9.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.4  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 280 VCSPLNENICNYNKKKTVRKLYYEM 354
           + S  N N  NYN     +KLYY +
Sbjct: 303 IISSNNYNYKNYNNNYNSKKLYYNI 327


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 280 VCSPLNENICNYNKKKTVRKLYYEM 354
           + S  N N  NYN     +KLYY +
Sbjct: 314 IISSNNYNYKNYNNNYNSKKLYYNI 338


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 295 NENICNYNKKKTVRKLYYEM 354
           N N  NYN     +KLYY +
Sbjct: 97  NYNNNNYNNNNYNKKLYYNI 116


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 295 NENICNYNKKKTVRKLYYEM 354
           N N  NYN     +KLYY +
Sbjct: 97  NYNNNNYNNNNYNKKLYYNI 116


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 265 LFQMHVCSPLNENICNYNKKKTVRKLYYEMK 357
           L+Q      L EN+ NYN K+ V +    +K
Sbjct: 55  LYQKARTFNLVENLDNYNDKEAVNEFMQLLK 85


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 295 NENICNYNKKKTVRKLYYEM 354
           N N   YN     +KLYY +
Sbjct: 92  NNNNYKYNYNNNCKKLYYNI 111


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 265 LFQMHVCSPLNENICNYNKKKTVRKLYYEMK 357
           L+Q      L EN+ NYN K+ V +    +K
Sbjct: 55  LYQKARTFNLVENLDNYNDKEAVNEFMQLLK 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,072
Number of Sequences: 438
Number of extensions: 3731
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)