Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021779
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50390.1 68416.m05512 transducin family protein / WD-40 repea...    29   3.3  
At1g76590.1 68414.m08912 zinc-binding family protein similar to ...    28   7.7  

>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to myosin heavy chain kinase B (gb:U90946)
           [Dictyostelium discoideum]
          Length = 469

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/74 (22%), Positives = 38/74 (51%)
 Frame = +1

Query: 496 VTNEENLIALNFSRSLNWYSTNIRSNIFYKQNLEC*LVKDYEILIKSDVIIGGRPWSSAR 675
           V  E ++ +L  S  L +  ++ ++   +K ++E    K    L+K+ V+ G + ++  +
Sbjct: 95  VREEGHIYSLATSGDLLYTGSDSKNIRVWKNHVEFSSFKSNSGLVKAIVLAGDKIFTGHQ 154

Query: 676 FGSTKTWKAACRST 717
            G  + WKAA + +
Sbjct: 155 DGKIRVWKAASKES 168


>At1g76590.1 68414.m08912 zinc-binding family protein similar to
           zinc-binding protein [Pisum sativum] GI:16117799;
           contains Pfam profile PF04640 : Protein of unknown
           function, DUF597
          Length = 245

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
 Frame = +1

Query: 502 NEENLIALNFSRSLNWYSTNIRSNIFYKQ-NLEC*LVKDYEILIKSDVIIGGRPWSSARF 678
           N  N   L   RS   Y   +R N   K  ++ C  V+ Y I     V +  RP      
Sbjct: 63  NHRNHRVLQIRRSS--YHNVVRVNEIQKYIDISC--VQTYIINSARIVFLNERPQPRIGK 118

Query: 679 GSTKTWKAACRSTRTSTKFC 738
           G T T +  CRS   S +FC
Sbjct: 119 GVTNTCEICCRSLLDSFRFC 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,001,491
Number of Sequences: 28952
Number of extensions: 231276
Number of successful extensions: 405
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)