Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021777
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    33   0.060
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce...    29   0.74 
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    27   2.3  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   3.0  
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    26   5.2  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   5.2  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    26   5.2  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   5.2  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    26   5.2  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    26   6.9  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    26   6.9  

>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 32.7 bits (71), Expect = 0.060
 Identities = 13/70 (18%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
 Frame = +3

Query: 72  IEHKIRNLEKRKSKLT-SYRD-LQKAGKELNSDQKVAVAKYDEVAQTLEFARDLSKQVTA 245
           + H++ +L+  +  L   + D ++K   E+++   + + K DE+ ++++   +L +++ +
Sbjct: 110 LSHEVNDLQTDRENLKHQFEDQIEKLNSEISNQNSLILQKKDELEKSIQRCSELEEKINS 169

Query: 246 IAILQSVRQK 275
           +   QS+ Q+
Sbjct: 170 LESAQSIEQE 179


>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +3

Query: 12  SEKPASSEDKDTPIRQIMTIIEHKIR--NLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK 185
           +++   ++++DTP+  +    +  +R  N EK+ SKL + R  ++  KE+       VA 
Sbjct: 76  NQQVTQTDEQDTPVLSLSKKSKKALRKSNAEKKDSKLRTSRRRERLRKEMVGRVTSVVAV 135

Query: 186 YDEVAQTL 209
             E A+ L
Sbjct: 136 NAETAKAL 143


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -3

Query: 753 RTNW-HIYFWFMFTLFMHLFFYWNRTFFYFCDCTIYS 646
           R  W  +YF +  TL  H+FF      F++  C  Y+
Sbjct: 61  RNPWLDVYFMYTATLGTHVFFMLALPIFFWSGCIYYT 97


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -3

Query: 513 VKPDCPSSFNSCLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPI 364
           V  +  SSF      TS Y+ S+ FK SSV L +     +    AS+LPI
Sbjct: 434 VSNNTQSSFLIISTFTSSYEHSEPFKVSSVPLTSNNFSSISHSSASSLPI 483


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 93  LEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARDLSKQV-TAIAILQSVR 269
           LEK KS L  +R+     K+L    +  V KYD+    ++  + + + +   +  L S R
Sbjct: 8   LEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSER 67

Query: 270 QKNKLKRKPGFVM 308
              K    P +V+
Sbjct: 68  FIVKASSGPRYVV 80


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 22/83 (26%), Positives = 36/83 (43%)
 Frame = +3

Query: 42  DTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFAR 221
           D P R I+      I+ +++R+ K  S+R  QKA K+L   +     K       +E   
Sbjct: 594 DRPRRLIVEFAIENIQVVKRRQEKEKSFR--QKA-KQLKQQEDEDNLKRKRSESDVEDNE 650

Query: 222 DLSKQVTAIAILQSVRQKNKLKR 290
              KQ     I+Q  R K + ++
Sbjct: 651 AKEKQAKVARIIQRKRMKRRSRK 673


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 22/78 (28%), Positives = 42/78 (53%)
 Frame = +3

Query: 3   NAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVA 182
           N+K+ + + SE+ +  I ++   ++ + RN   R+ KL    DL+K+ K+     K+ V 
Sbjct: 535 NSKNVQQSRSEELEQQISKLTDNLQ-EYRNTV-RELKL----DLEKSKKKNEDLSKLEVE 588

Query: 183 KYDEVAQTLEFARDLSKQ 236
           K +E+A   +    L+KQ
Sbjct: 589 KVEEIANLKKELTHLAKQ 606


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 534 CSSCYLKVKPDCPSSFNSCLGVTSGYKSSKIFK 436
           C  C L  K  CPS+F    G+T   +  K  K
Sbjct: 217 CDMCTLSSKGLCPSAFKEKSGITITKRKVKTIK 249


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 18/83 (21%), Positives = 39/83 (46%)
 Frame = +3

Query: 6   AKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK 185
           A   K ASS   D+P+R+ +++      +  +  +  +SY          N+D+ +  + 
Sbjct: 379 ANKHKTASSATVDSPLRRSLSV------DAMQSNASFSSYSSTS------NTDKSLRPSS 426

Query: 186 YDEVAQTLEFARDLSKQVTAIAI 254
           Y  V+++  F  D+S+    I++
Sbjct: 427 YSAVSESSNFTHDVSRDNKEISL 449


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +3

Query: 21  PASSEDKDTPI--RQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDE 194
           P   ED   P    Q    I       +K+K+      +LQ AGK+L + Q+   A Y +
Sbjct: 134 PTDQEDPRNPQLDSQYEAFITQGESQTDKKKTSTVQEEELQNAGKKLETVQENPQA-YSK 192

Query: 195 VAQ 203
           V Q
Sbjct: 193 VTQ 195


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 492 KKDNLVSPSNNKSCRTPLL 548
           K+D + SPSNNK    PLL
Sbjct: 345 KQDRVPSPSNNKEDHLPLL 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,804,684
Number of Sequences: 5004
Number of extensions: 52734
Number of successful extensions: 177
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)