Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021777
         (776 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   1e-12
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 33   0.20 
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_22971| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    31   1.4  
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   30   1.8  
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_933| Best HMM Match : ExoD (HMM E-Value=6)                          29   3.2  
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        29   4.2  
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   5.5  
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)                      29   5.5  
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)        28   7.3  
SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_43182| Best HMM Match : DUF1257 (HMM E-Value=8.3)                   28   9.7  
SB_2853| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.7  

>SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
 Frame = +3

Query: 12  SEKPASSE---DKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVA 182
           S KP+ S+   D     +  + ++E K+RNLEKRK KL  Y+    +G+ELN+DQK A+A
Sbjct: 5   SSKPSDSQALMDSSDIAKSGLLLVEKKVRNLEKRKLKLDGYKKQMDSGQELNADQKAAIA 64

Query: 183 KYDEVAQTLEFARDLSKQVTAIAILQSVRQKNKLKRKPGFVMQQ 314
             D V   L+ A+DL KQ   +   +  RQ+ K  R+     QQ
Sbjct: 65  NLDVVEMNLDMAKDLLKQFQQMH-SEYQRQQKKQARRDQVAQQQ 107



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 28/61 (45%), Positives = 37/61 (60%)
 Frame = +2

Query: 302 RYAAETNKIKEVLLILDCLMQMGSADARTDFINGTNGAAKLTEDDLKILDDLYPEVTPKH 481
           ++ A+  K+ EVL  L  LM   S D RTDF+NGTNGA  +TED    +D+ Y  +TP  
Sbjct: 109 QHNADVLKVNEVLE-LQHLMDSLSEDVRTDFLNGTNGAVVVTEDQFVQIDEFYKLITPDE 167

Query: 482 E 484
           E
Sbjct: 168 E 168


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
 Frame = +3

Query: 39  KDTPIRQIMTIIEHKIRNLEKRKSKLTSY-RDLQKAGKELNSDQ----KVAVAKYDEVAQ 203
           KD+  ++  ++ E KIR L+KR S+L S  R L+   K+L  ++    K A +K D  A+
Sbjct: 322 KDSGNQKATSLGEEKIRKLKKRNSELVSIARQLEDKAKKLQDEKNAILKQANSKADNTAE 381

Query: 204 TLE-----FARDLSKQVTAIAILQSVRQKN-KLKRKPGF 302
            LE     FAR  +K +   A +Q  +    ++ RK  F
Sbjct: 382 -LEHMKKLFARQRAKDLAEHARIQMAKDNELEILRKEHF 419


>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 808

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
 Frame = +3

Query: 12  SEKPASSEDKDTPIRQIMTIIEHKIRNLEKR--KSKLTSYRDLQKAGKELNSDQKVAVAK 185
           SE   S +D+   + +    +E ++  L      SKL +  DL  A  +L  ++ V   +
Sbjct: 587 SENSQSMQDRILKLEEERNSLEVEVSRLRSELVSSKLKADEDLMNAKTKLKQEELVRSRQ 646

Query: 186 YDEVAQTL-----EFARDLSKQVTAIAILQS----VRQKNKLKRKPGFVMQQR 317
           YDE    L     E     +KQ + I+ LQS    + ++N++ ++    M+Q+
Sbjct: 647 YDERIHLLQTSFEELQLQSTKQQSKISELQSQLSAITRENEINKRQLETMKQQ 699


>SB_22971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 75  EHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLE 212
           + KIRNL+K+  ++   +  QKAGK+L  +Q   +   D + + ++
Sbjct: 65  DKKIRNLKKKLRQIEELKTQQKAGKQLEVNQLEKLKNEDALLKEIK 110


>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/55 (23%), Positives = 30/55 (54%)
 Frame = +3

Query: 12   SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVA 176
            +E+P +        +   T++++   + +  ++  T +RD+Q+ GKE NSD  ++
Sbjct: 1928 TEQPVAPSASLQTTKAEKTLVKNTAESTKYTETSSTQHRDIQQRGKEQNSDDALS 1982


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = +3

Query: 12   SEKPASSEDKDTPIRQIMTIIEHKIRNLEK-RKSKLTSYRDLQKAGKELNSDQKVAVAKY 188
            SE  A  ++KD  + +   + + KI+  +  +KSK     +L KAGK + +   V   K 
Sbjct: 861  SESEAEDDEKD--VEEKHEVKQDKIKKKKHDKKSKAKDKDNLAKAGKAIQAILDVTTRKK 918

Query: 189  DEVAQTLEFARDLSKQVTAIAILQS 263
             + AQ+L+        V A   ++S
Sbjct: 919  ADAAQSLQTCPGSCPDVCAPQCMES 943


>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2672

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = +3

Query: 6    AKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK 185
            AK +     E  +  I ++   +E     LE+ + +L+    LQ   KEL S++K    K
Sbjct: 1684 AKKKNHEEEERLEAEIAELANTVETLRTELEQSQVRLSK---LQTQVKELKSEKKELQRK 1740

Query: 186  YDEVAQTLEFARDLS 230
             DE+    +  R+LS
Sbjct: 1741 VDELTSEAQRRRNLS 1755


>SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 737

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 28/103 (27%), Positives = 45/103 (43%)
 Frame = +3

Query: 15  EKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDE 194
           E  A  E     I      IEHKI+ LEK+        D Q +  E N D+  +     E
Sbjct: 451 EFEARQEQCSADIDSARRSIEHKIQRLEKK-------FDQQFSSTEKNMDKNDSSLPKKE 503

Query: 195 VAQTLEFARDLSKQVTAIAILQSVRQKNKLKRKPGFVMQQRPT 323
           + Q  +   DLS +   +     VR  +++K +   ++Q++PT
Sbjct: 504 IFQ--QIVTDLSDEFQKVTRNLEVR-TSEMKNELSVLVQEKPT 543


>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
          Length = 555

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = -3

Query: 459 YKSSKIFKSSSVNLAAPFVPFMKSVLASALPICIRQSRISKTSFILLVSA 310
           Y SS     S++N++ PF+P+   V+    P  +RQ  I K  FI LVSA
Sbjct: 82  YPSSMDGVDSTLNMS-PFIPY---VIRPKGPRLLRQGTIMKAGFIGLVSA 127


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
 Frame = +3

Query: 117 TSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFA-RDLSKQVT--AIAILQSVRQKNKLK 287
           +SY  +QK  +EL  D   A AK++E+   L+ A R+L K+    ++ I +   Q N + 
Sbjct: 497 SSYLAVQKEKEELQDDLLTAQAKFNELQAELDKAHRELQKESKGGSLKISKYEAQINNVT 556

Query: 288 RKPGFVMQQ 314
           ++   + QQ
Sbjct: 557 KQKNALKQQ 565


>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 2682

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
 Frame = +3

Query: 39   KDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQK-----VAVAKYDEVAQ 203
            KD  ++ +   +   ++ L  R++    Y  LQ    E    +K      AVA   E A+
Sbjct: 1065 KDPALQSLAQEVLSLVKGLVGREAMSEVYASLQHGVMETKEKRKRQRALEAVADPAESAR 1124

Query: 204  TLEFARDLSKQVTAIAILQSVRQKNKLKRKPGFVMQQRPTK*KKFYLFWIALCK 365
              +F R+LSK+ T    L +++   K+KR    V + +      F + W ++ +
Sbjct: 1125 R-KFKRNLSKKETRKRKLDALKPDRKMKRARSKVEKSQTPSLMCFVMTWKSISR 1177


>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
          Length = 2110

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +3

Query: 33  EDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK--YDEVAQT 206
           E +D PI +I ++++    N+EK   K   ++D ++ GK     +K    K   D+  QT
Sbjct: 208 EIEDEPINEISSLVDFVDENIEKSLLKDPLWQDEEEKGKRKKKKKKRKRDKSLQDQTCQT 267

Query: 207 L 209
           +
Sbjct: 268 M 268


>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
          Length = 1128

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 33  EDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRD 131
           ED++  IRQ+  IIE K  ++E++  +L   RD
Sbjct: 847 EDREDEIRQLRQIIEDKESDIEEQVMELIHLRD 879


>SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 5/27 (18%), Positives = 18/27 (66%)
 Frame = -3

Query: 744 WHIYFWFMFTLFMHLFFYWNRTFFYFC 664
           +H Y+++ +  + + ++Y+   ++Y+C
Sbjct: 7   YHYYYYYYYYYYYYYYYYYYYYYYYYC 33


>SB_43182| Best HMM Match : DUF1257 (HMM E-Value=8.3)
          Length = 123

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 525 CYLKVKPDCPSSFNSCLGVTSGYK 454
           C LKV PD  SS + CL   SG K
Sbjct: 31  CQLKVVPDATSSSDVCLAWNSGEK 54


>SB_2853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 525 CYLKVKPDCPSSFNSCLGVTSGYK 454
           C LKV PD  SS + CL   SG K
Sbjct: 31  CQLKVVPDATSSSDVCLAWNSGEK 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,253,825
Number of Sequences: 59808
Number of extensions: 366013
Number of successful extensions: 874
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)