Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021777
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr...    33   0.30 
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch...    33   0.30 
Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical pr...    31   0.70 
Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical pr...    31   0.70 
AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.     31   0.70 
Z74029-2|CAA98432.1|  334|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U41549-3|AAA83283.2|  245|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z29095-7|CAA82352.2|  319|Caenorhabditis elegans Hypothetical pr...    28   6.5  
L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...    28   8.6  
AF068709-10|AAC19252.2|  345|Caenorhabditis elegans Seven tm rec...    28   8.6  

>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
            K12F2.1 protein.
          Length = 1969

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +3

Query: 12   SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYR-DLQKAGKELNSDQKVAVAKY 188
            +E   S EDK   + +I   +E ++  LE+   +    R D++KA +++  D KVA    
Sbjct: 1020 NEDLQSEEDKVNHLEKIRNKLEQQMDELEENIDREKRSRGDIEKAKRKVEGDLKVAQENI 1079

Query: 189  DEVAQ 203
            DE+ +
Sbjct: 1080 DEITK 1084


>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
            protein.
          Length = 1969

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +3

Query: 12   SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYR-DLQKAGKELNSDQKVAVAKY 188
            +E   S EDK   + +I   +E ++  LE+   +    R D++KA +++  D KVA    
Sbjct: 1020 NEDLQSEEDKVNHLEKIRNKLEQQMDELEENIDREKRSRGDIEKAKRKVEGDLKVAQENI 1079

Query: 189  DEVAQ 203
            DE+ +
Sbjct: 1080 DEITK 1084


>Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 537 FCSSCYLKVKPDCPSSF-NSCLGVTSGYKSSK 445
           FCS+C +KV P C S+  ++C  VT   + SK
Sbjct: 514 FCSNCDVKVHPHCTSALTDACYPVTQSKQKSK 545


>Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 537 FCSSCYLKVKPDCPSSF-NSCLGVTSGYKSSK 445
           FCS+C +KV P C S+  ++C  VT   + SK
Sbjct: 514 FCSNCDVKVHPHCTSALTDACYPVTQSKQKSK 545


>AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.
          Length = 1293

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 537 FCSSCYLKVKPDCPSSF-NSCLGVTSGYKSSK 445
           FCS+C +KV P C S+  ++C  VT   + SK
Sbjct: 467 FCSNCDVKVHPHCTSALTDACYPVTQSKQKSK 498


>Z74029-2|CAA98432.1|  334|Caenorhabditis elegans Hypothetical
           protein C45B11.4 protein.
          Length = 334

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 744 WHIYFWFMFTLFMHLFFYWNRTFFYFCDCTIYSFIKVS 631
           WH Y W MFT  + +  +    FF+ C C  Y +   +
Sbjct: 208 WHTYLW-MFTTIIVIGIFIQVAFFFLC-CLYYIYFSTT 243


>U41549-3|AAA83283.2|  245|Caenorhabditis elegans Hypothetical
           protein F22F1.3 protein.
          Length = 245

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/21 (66%), Positives = 14/21 (66%)
 Frame = +1

Query: 1   LMQNLKSRPLRRIRIHQFDKL 63
           L  N KSR  RRIRIH  DKL
Sbjct: 129 LKPNAKSRITRRIRIHVIDKL 149


>Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical
           protein F26F2.6 protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/39 (23%), Positives = 23/39 (58%)
 Frame = +1

Query: 514 LQITRAAEHLYSIIDGKPKEVLGTTYLRIKEIVSTVHEC 630
           L   +   + + +IDG+P +++ +T +++K+    V +C
Sbjct: 14  LAAQKGPSYKFGVIDGEPIDLINSTSVQVKDFDECVEKC 52


>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
           protein F59A2.6 protein.
          Length = 1133

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/78 (24%), Positives = 38/78 (48%)
 Frame = +3

Query: 3   NAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVA 182
           NAK +     E+K T I++    ++   + ++  K +L   +   ++ +EL S QK    
Sbjct: 367 NAKEDLKVVEEEKHTGIQRAQGALDDAEKEVKVLKEQLERAQSALESSQELASSQK--AD 424

Query: 183 KYDEVAQTLEFARDLSKQ 236
           K  E+ + L+ A+  S +
Sbjct: 425 KIQELEKELQNAQKRSSE 442


>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
           protein F59A2.6 protein.
          Length = 1133

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/78 (24%), Positives = 38/78 (48%)
 Frame = +3

Query: 3   NAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVA 182
           NAK +     E+K T I++    ++   + ++  K +L   +   ++ +EL S QK    
Sbjct: 367 NAKEDLKVVEEEKHTGIQRAQGALDDAEKEVKVLKEQLERAQSALESSQELASSQK--AD 424

Query: 183 KYDEVAQTLEFARDLSKQ 236
           K  E+ + L+ A+  S +
Sbjct: 425 KIQELEKELQNAQKRSSE 442


>Z29095-7|CAA82352.2|  319|Caenorhabditis elegans Hypothetical
           protein R10E11.7 protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 256 RIAIAVTCFERSL-ANSRVWATSSYLATATF*SEFSSFPAFCRSRYDV 116
           RIA+ V+     L  +S++W  +S+  TA F      + + CR  YD+
Sbjct: 109 RIAVVVSMQASQLFTSSKIWLYTSFHMTANFACLIIPYLSECRINYDI 156


>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +3

Query: 12  SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGK 149
           S  PAS+ D DT +R+I   +E  +++ ++  + +  +R   + G+
Sbjct: 15  SASPASASDSDTSVRKIGKALETYLKHSQQHVAMMEKHRAEFETGR 60


>AF068709-10|AAC19252.2|  345|Caenorhabditis elegans Seven tm
           receptor protein 33 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -3

Query: 750 TNWHIYFWFMFTLFMHLFFYWNRTFFYFCDCTIYSFIKVSTFMNC*YNL 604
           T W + FW  + +F    F W+ + ++      YS+  + T     YN+
Sbjct: 130 TGWKLVFWVFYVIFFG--FAWSASVYFCLFPDTYSYNYIRTEFKDVYNI 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,388,109
Number of Sequences: 27780
Number of extensions: 292503
Number of successful extensions: 893
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)