Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021777
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73700.1 68414.m08534 MATE efflux family protein similar to r...    32   0.49 
At3g55990.1 68416.m06221 expressed protein contains Pfam profile...    31   0.64 
At5g17910.1 68418.m02100 expressed protein                             31   0.85 
At1g11400.2 68414.m01310 expressed protein                             30   1.5  
At1g11400.1 68414.m01309 expressed protein                             30   1.5  
At3g20150.1 68416.m02554 kinesin motor family protein contains P...    30   2.0  
At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UD...    29   4.5  
At5g27330.1 68418.m03263 expressed protein                             28   6.0  
At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom...    28   7.9  
At1g71760.1 68414.m08294 hypothetical protein                          28   7.9  

>At1g73700.1 68414.m08534 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile: PF01554
           uncharacterized membrane protein family
          Length = 476

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -3

Query: 561 SINYGVEVFCSSCYLKVKPDCPSSFN--SCLGVTSGYKSSKIFKSSSVNLAAPFVPFMKS 388
           S++Y   V   SCY+K  P C  S+   S       Y  SKI   S+V +      F   
Sbjct: 211 SVSYWFNVILLSCYVKFSPSCSHSWTGFSKEAFQELYDFSKIAFPSAVMVCLELWSFELL 270

Query: 387 VLASAL 370
           VLAS L
Sbjct: 271 VLASGL 276


>At3g55990.1 68416.m06221 expressed protein contains Pfam profile
           PF03005: Arabidopsis proteins of unknown function
          Length = 487

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +3

Query: 12  SEKPASSEDKDTPIRQIMTI-IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKY 188
           + KP    D+ TPI +I T+ ++  I+N +  +  + +   +Q + K++    +  V+K 
Sbjct: 56  TSKPHDVHDEATPITEITTLPVQESIKNSDPIQESIKNADSVQDSVKDVAEPVQEEVSKT 115

Query: 189 DEVAQTLEFA 218
           +EV +   FA
Sbjct: 116 EEVKKIELFA 125


>At5g17910.1 68418.m02100 expressed protein
          Length = 1342

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 54  RQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLE 212
           RQ+  + E K+ ++   +S  T   D +K   E N+D++  +AK D V+   E
Sbjct: 524 RQLSEVSESKVSSIPDTESVCTVLEDDEKKVDENNADRETKIAKVDMVSDNDE 576


>At1g11400.2 68414.m01310 expressed protein
          Length = 204

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +3

Query: 72  IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARD 224
           +E +IR L K+K +LT  +  + A ++LN +Q    +K +E  Q L+   D
Sbjct: 152 VEKRIRAL-KKKIRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQELKALED 201


>At1g11400.1 68414.m01309 expressed protein
          Length = 204

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +3

Query: 72  IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARD 224
           +E +IR L K+K +LT  +  + A ++LN +Q    +K +E  Q L+   D
Sbjct: 152 VEKRIRAL-KKKIRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQELKALED 201


>At3g20150.1 68416.m02554 kinesin motor family protein contains Pfam
            domain, PF00225: Kinesin motor domain
          Length = 1114

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
 Frame = +3

Query: 9    KSEKPASSEDKDTPIRQIM---TIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAV 179
            K EK +S E +D   R ++     +EH    L+++ + L S     KA  E  ++ K AV
Sbjct: 926  KQEKLSSEELEDALRRAVLGHARFVEH-YTELQEKYNDLCSKH---KATVEWITELKKAV 981

Query: 180  AKYDEVAQTLEFARDLSKQVTAIAILQSVRQKNKLKRK 293
            AK  +      FA+ L+ +++A+ + +  R+++ LK++
Sbjct: 982  AKAGKKGCGSRFAKSLASELSALRV-ERERERDLLKKE 1018


>At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UDP
           glucosyltransferase, putative similar to sucrose
           synthase GI:6682841 from [Citrus unshiu]
          Length = 942

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 111 KLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARDLSKQVT 242
           KL     L    +++N DQK A  +Y E+   L+F + L+K+VT
Sbjct: 766 KLLKMGSLYGFWRQVNEDQKKAKKRYIEMLYNLQF-KQLTKKVT 808


>At5g27330.1 68418.m03263 expressed protein
          Length = 628

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 36  DKDTPIRQIMTIIEHKIRNLEKRK---SKLTSYRDLQKAGKELNSDQ 167
           D++T IR +       IR LE  +   S++   RDL K+G +L S++
Sbjct: 141 DRETEIRDLKREANGLIRKLESEREEFSRVCDERDLVKSGFDLQSEE 187


>At5g16780.1 68418.m01965 SART-1 family protein contains Pfam
           domain, PF03343: SART-1 family
          Length = 820

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 87  RNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARDLS 230
           RN++K+KSKL    D    GKE    +     K   + +T EF R L+
Sbjct: 649 RNMDKKKSKLVGIVD-DDGGKESKDKESKDRFKDIRIERTDEFGRTLT 695


>At1g71760.1 68414.m08294 hypothetical protein
          Length = 259

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 392 FINGTNGAAKLTEDDLKILDDLYPEVTPKHELNEE 496
           F+   N + K+ +++   + D +PEV  + E+NEE
Sbjct: 56  FVQSFNMSRKVADEEAHAVGDSFPEVYVEGEVNEE 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,331,228
Number of Sequences: 28952
Number of extensions: 261736
Number of successful extensions: 720
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)